Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0839 ATGGCAGCGTTAGAATCATCACTTTCTGTGTTCGCACCTCAACGTTTCTCCACTATCCATCTCTTCCCTGCAAAACCACCCGAATTCGTTAAGCTCCATGCTTCCCTTTCCCACTCTCACAACCTTCTCTTCTCTTCCAATGCCTCCTCCAAAACCCCAAAACCCTGCACTCAATTATGCTCTGCTTTGCAAGAAGTAGCAGAAGCAGCTACGGAGGAAGAACCAGAGCAAGACCAGCAAGCAACCTATATCAAGAAGAAGCTCTACGTGTTTAACTTGCCTTGGTCTATGTCCGCCGCTGACATCAAAGACCTCTTTGGACAGTGCGGAACTGTCACCGACGTCGAGATAATAAGGGGCAAAGATGGGAGAGGCAAAGGATATGCTTTTGTTACTATGGCTTCTGGGGAAGAGGCTCAGGCTGCTGTTGATAAATTTGACACTCTTGAATTATCCGGACGGATATTAAGGGTAGAGCTTGCAAAGAGATTTAAGAAACCTTCTCCCCCAGGTCCTCCAAGTCCTCCTCCTAGTGAGGCACGTCATGTAATTTATGCATCCAACCTTGCATGGAAAGTAAGATCTACCCATCTCAGAGAATTCTTCACTGAGAATTTCAAAGCACCACTTTCAGCCAGAATTGTCTTTGATACCCCTTCTGGATGGGCAACTGGGTATGGATTTATTTCTTATCTTACAAAGGAGGAAGCAGAGGCTGCCATATCTGCTTTGGATGGGAAGGAGTTAATGGGACGATCACTTTTTCTAAAAATCAGTGAAAAAAAAGTTAAAGAAGCTGGAAGCGAAAAAGATGAAGACTTAGACCAAGGTCATGATGCCCCAACAGAAGAATCATAA 858 0.4487 MAALESSLSVFAPQRFSTIHLFPAKPPEFVKLHASLSHSHNLLFSSNASSKTPKPCTQLCSALQEVAEAATEEEPEQDQQATYIKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKFDTLELSGRILRVELAKRFKKPSPPGPPSPPPSEARHVIYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKKVKEAGSEKDEDLDQGHDAPTEES* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0839 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 261 IPR000504 GO:0003723
Lja2g0839 285 SUPERFAMILY RNA-binding domain, RBD 86 261 IPR035979 GO:0003676
Lja2g0839 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 163 IPR000504 GO:0003723
Lja2g0839 285 SMART rrm1_1 183 257 IPR000504 GO:0003723
Lja2g0839 285 SMART rrm1_1 87 159 IPR000504 GO:0003723
Lja2g0839 285 MobiDBLite consensus disorder prediction 263 285 - -
Lja2g0839 285 Gene3D - 54 165 IPR012677 -
Lja2g0839 285 Gene3D - 166 273 IPR012677 -
Lja2g0839 285 PANTHER CHLOROPLAST, PUTATIVE-RELATED 5 274 - -
Lja2g0839 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 253 IPR000504 GO:0003723
Lja2g0839 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 156 IPR000504 GO:0003723
Lja2g0839 285 PANTHER OS02G0815200 PROTEIN 5 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0839 Lja-Chr2 7823739 7827229 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0839 87 276 Eukaryotic Initiation Factors Gene Family AT1G49760 24.479 3.36e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0839 - - gmx:100793319 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0839 2 7823739 7827229 Lja2g0839 2 7823739 7827229 ECH