Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0838 ATGGCTTCTCTCGGCAACCCGAAAACTTGGGTTCCATACATGAACAACAAAGACTGTTCTCAAGGATTTTGCAGCTTCTATTGTCCACAATGGTGTTATGTACTCTATCCTCCTCCTCCCCCTCCTTCTCCCTTTGAATTTCCTGAAGAGGATTCAGGTCCAAATTTCTCCCCTCTCGTTATTTCAGTTATTGGTGTCTTGGCCAGTGCTTTTCTTCTTGTGACTAACTATGTCATAATATCCAAGTACTGTGGCCGCAGAGAATCTTCACAGCGCGAGAACCATGAAGCCAATGCTGAATTGGAGGAGAATGAGAATCACAACCCTTCACTCCATGAACCGTGGCATGTTTCAACCTCTGGCTTAGAAGAGGCTTTGATTAAGTCCATAACAGTTTGCAAGTACAAGAAAGGCAATGGTTTAGTTGAGGTAACGGATTGCTCCGTTTGTTTAAGCGAGTTTCAAGACGATGAGAGTATTAGGCTTTTGCCAAAGTGCAGCCATGCTTTTCATCTCAATTGCATTGACACATGGCTCAAATCTCACTCCAATTGCCCTCTTTGTCGTGCTAGCATATTCACCTTCAATGCTGCAGCAGCACTTGATGTGGTGGAACTCCCTTCAAGGAACGAAGCTTCTTCAGAAAATCAACATGTAGGTGGTGGAAGAGACAGTGAATTATTGGATGATGTGGAAGAAGAAGAAACCTTGCATGGTGGTACAGAAGCTCCGAAGACCGCATTTCGTGCTTTCAGTGATTTAGGCAATTTGAGAGGAAGGCAAAGTGTGATTGAGATTAGAGATGAAGACTATTATGAATCCATTCGAAGGTCGGTGTCGATGGATCATTCGTTTCAAAGTGGTATTTCAGTTGCTGATGTGCTGCAAATAAATGAGGAGCAAGATTTCCAAGTGGAAGCATGCTCCCTTGGACCTGGTCCATCAAAGAGATCAAGAGGTGAAAGTAGCAAGTCTAGCTGTAGAAGGAAGGTTTTGCATTGTGTTGTGAGTCCAATTGCAATGAAGAGATCCTTTTCCAGTGGGAGATTCTCTCTTAGCAGAAATGGCAGAGGGAGACAAGGGGTTTTGCCTTTCTAG 1098 0.439 MASLGNPKTWVPYMNNKDCSQGFCSFYCPQWCYVLYPPPPPPSPFEFPEEDSGPNFSPLVISVIGVLASAFLLVTNYVIISKYCGRRESSQRENHEANAELEENENHNPSLHEPWHVSTSGLEEALIKSITVCKYKKGNGLVEVTDCSVCLSEFQDDESIRLLPKCSHAFHLNCIDTWLKSHSNCPLCRASIFTFNAAAALDVVELPSRNEASSENQHVGGGRDSELLDDVEEEETLHGGTEAPKTAFRAFSDLGNLRGRQSVIEIRDEDYYESIRRSVSMDHSFQSGISVADVLQINEEQDFQVEACSLGPGPSKRSRGESSKSSCRRKVLHCVVSPIAMKRSFSSGRFSLSRNGRGRQGVLPF* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0838 365 MobiDBLite consensus disorder prediction 91 110 - -
Lja2g0838 365 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Lja2g0838 365 Coils Coil 87 107 - -
Lja2g0838 365 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 356 IPR044675 -
Lja2g0838 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 196 IPR013083 -
Lja2g0838 365 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 356 - -
Lja2g0838 365 SUPERFAMILY RING/U-box 146 195 - -
Lja2g0838 365 CDD RING-H2_PA-TM-RING 146 189 - -
Lja2g0838 365 Pfam Ring finger domain 146 189 IPR001841 -
Lja2g0838 365 SMART ring_2 147 188 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0838 Lja-Chr2 7819078 7820346 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0838 1 302 C3H Transcription Factor Family AT3G03550 41.615 3.78e-66 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0838 - - gmx:100792267 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0838 2 7819078 7820346 Lja2g0838 2 7819078 7820346 ECH