Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0837 ATGGCCTTAGAAACTCTTCCATCTAGTGATTTTTCCAACTTCATCATCTATGACACCATCTCTGCTACTCCATTTAGCAGCTATGAGTATTCATCAGAGACTAGCTTGTTATTAGAAGAGAATAGAGTGAAACATCATGAACATGACCCTGCATTGGTGACAAGAAAACGGCAATGTGGTGAACCAGAAGCCGTTGGCCAGAGGCGGAATTTCGCCGTGCAAGGGAGGAAGAAGAGGAGGAGAAAGACAAGGATTTGTAAGAGCAAGGAAGAGGCAGAGACTCAAAGAATGACTCACATTACTGTAGAAAGAAACCGCCGGAAACAGATGAATGAGCATCTTGCTGTTCTGAGATCACTCATGCCTGAATCCTATGTCCAAAGGGGTGACCAGGCCTCAATAGTGAGTGGAGCAATAGAATTTGTGAAGGAACTAGAGCACCTAATGCAGTCCCTTGAGGCTAAAAAATTTCAGCTTTTACATCAAGGAGTGGCACTAACCAGTACTGAAGAAGATAAAGCCATTTCCAACTCCATGATCATGACACCCCCTTTTGCTAATTTTTTTGTGCATCCTCAGTACACGTGGTCCCTGGCTCACAAATACACTTCTTCTTCTGAGACTGCAGCAGCAGCCATAGCTGATATTGAGGTTACTCTGATCGAGACACATGCAAACCTTCGAATTCTCACAAGGAGAAGCCCGAGGAAGCTATCAAAGCTTGTTGCTGGTTTTCAAGCACTCTTCCTCACTATACTGCATCTCAATGTCACCACTATGGACCCCTTGGTACTCTTTTCTATCAGTACTAAGGTTGAGGAAGGATGCCAGCTTGGTTCAGTAGATGACATTGCAACTGCAGTTCACAACTTGCTTAGAATGATTGATGATGAAGCTTCCCTTTGCTGTTAA 912 0.4397 MALETLPSSDFSNFIIYDTISATPFSSYEYSSETSLLLEENRVKHHEHDPALVTRKRQCGEPEAVGQRRNFAVQGRKKRRRKTRICKSKEEAETQRMTHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVSGAIEFVKELEHLMQSLEAKKFQLLHQGVALTSTEEDKAISNSMIMTPPFANFFVHPQYTWSLAHKYTSSSETAAAAIADIEVTLIETHANLRILTRRSPRKLSKLVAGFQALFLTILHLNVTTMDPLVLFSISTKVEEGCQLGSVDDIATAVHNLLRMIDDEASLCC* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0837 303 Pfam Helix-loop-helix DNA-binding domain 95 146 IPR011598 GO:0046983
Lja2g0837 303 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 94 145 IPR011598 GO:0046983
Lja2g0837 303 PANTHER TRANSCRIPTION FACTOR BHLH71 1 302 - -
Lja2g0837 303 Gene3D - 86 162 IPR036638 GO:0046983
Lja2g0837 303 SMART finulus 100 151 IPR011598 GO:0046983
Lja2g0837 303 Coils Coil 142 162 - -
Lja2g0837 303 CDD bHLH_AtFAMA_like 97 156 - -
Lja2g0837 303 PANTHER MAX DIMERIZATION, MAD 1 302 - -
Lja2g0837 303 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 166 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0837 Lja-Chr2 7814350 7816322 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0837 86 272 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 54.545 1.34e-60 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja2g0837 HLH 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0837 - - pvu:PHAVU_003G284500g 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0837 2 7814350 7816322 Lja2g0837 2 7814350 7816322 ECH