Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0835 ATGTCTTCCCCAAAAGCAGAGAATTTTGAAACTCCACGACCGCCACCCGTAGTTACCTCCTCCTACACCACTCTCCCGGCGCTAGTCGCCTTCGCCCTTCTCGCGGTGGTGGTCTGCTTCGTCGGCTTCGGCATCCTCTACTCCTGCCGGTGTTGTTTCCTCAGCGTCATACACACGTGGGCCTTCCAACAATCAGCCTCCGGCACCACCCTCGTCCGCCTCTCCCGCAACAACAACAACGCCTCATCATCGTCTCCTAATTACAGAGGCCTCGACCCTTCTCTCCTGCAAACGTTCCCCACTTTTCTCTACGCCTCCGTCAAGAACCTCCGCAAGGGGAAGAATTACAGCCTCGAATGCGCCATCTGTTTGCTGGAATTCGAGGACGACAGTCTCCTCCGCCTCCTCACCGCCTGCTGCCATGTGTTCCACCAGGACTGCATTGATCTCTGGCTCCGGTCTCACAAGACGTGTCCCGTTTGTCGCGTGGATCTCGACTCACCGGCCAACTTAGCGTCACCAAAACTTCAGGAGGTTGTGTTGGAGGACGATCATAATGACAATGTTGTAGAAGAGAGAAGAGGTACTGGTGATGATGTGTGCATTGAGGTGAAAGAAGGTGAAGGAGATCATCATCATGGTGGTGATGATAATGATGAGAGGTTGTTTCCACGGTCACACTCTACCGGGCATTCGGTGGTTATGATAAGAGGAGGAGCCGGAGAACAAGATGATAAGTACACGTTGAGGTTGCCGGAGCACGCGGCGTTGAAAGTTGTTAGAGGAGGGCGTAACTGCACTAAGAGTTGTTCCAGTTACAAGGATATGGCTGCTCCTTCAGCTGCAGCTGCTGCTGCACCTTGTAGTAATTGTGGTTATGTACAGAGTCAAACTGTGTTTGGTTGCTCTTCACGTAGCACTGCAGAAAATACTTGA 936 0.5256 MSSPKAENFETPRPPPVVTSSYTTLPALVAFALLAVVVCFVGFGILYSCRCCFLSVIHTWAFQQSASGTTLVRLSRNNNNASSSSPNYRGLDPSLLQTFPTFLYASVKNLRKGKNYSLECAICLLEFEDDSLLRLLTACCHVFHQDCIDLWLRSHKTCPVCRVDLDSPANLASPKLQEVVLEDDHNDNVVEERRGTGDDVCIEVKEGEGDHHHGGDDNDERLFPRSHSTGHSVVMIRGGAGEQDDKYTLRLPEHAALKVVRGGRNCTKSCSSYKDMAAPSAAAAAAPCSNCGYVQSQTVFGCSSRSTAENT* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0835 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 168 IPR013083 -
Lja2g0835 311 PANTHER RING FINGER DOMAIN-CONTAINING 12 278 - -
Lja2g0835 311 Pfam Ring finger domain 119 162 IPR001841 -
Lja2g0835 311 PANTHER RING-H2 FINGER PROTEIN ATL29 12 278 - -
Lja2g0835 311 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Lja2g0835 311 SUPERFAMILY RING/U-box 113 178 - -
Lja2g0835 311 SMART ring_2 120 161 IPR001841 -
Lja2g0835 311 CDD RING-H2_PA-TM-RING 119 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0835 Lja-Chr2 7790354 7791289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0835 26 264 Rapid Response to Elicitors AT2G35000 35.185 1.00e-37 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0835 - - ccaj:109800443 281.952