Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0828 ATGTCAGACCGGGGTACCTTCTCCGGTGACTCGGCGGCCGTGGCAGATGTTGTTGTTAAGGAAGGAGAGACAAAAATGGAGCACAAGGTTCCATTCTTAAAGCTGTTCTCCTTTGCTGACTCTTATGATTGGGTGTTAATGGCTATTGGATCTGTTGGGGCGTGTATTCATGGTGCTTCTGTTCCTGTTTTCTTCATCTTCTTTGGGAAGTTGATTAATGTCATTGGCTTGGCTTATCTTTTCCCCAAGGAAGCTTCTCACAAAGTTGCCAAGTACTCGTTGGATTTTGTCTATCTAAGTATAGCAATTTTGTTCTCGTCTTGGATAGAGGTGGCTTGTTGGATGCATACCGGTGAGCGTCAAGCAGCAAAGATGAGAATGGCGTATTTAAGGGCCATGTTGAATCAAGATATAAGCTTATTTGATACAGAGGCATCAACTGGGGAGGTAATTTCGGCCATTACAAGTGACATCATCATTGTTCAAGATGCGCTATCAGAGAAGGTAGGGAACTTCTTGCACTACATAAGCCGATTCATAGCGGGGTTTACTATTGGATTTGTCAGAGTGTGGCAGATTAGTTTAGTGACACTTTCAATTGTGCCTTTGATTGCTCTTGCTGGAGGTCTTTATGCATATGTCACAATTGGTCTCATTGCAGAAGTTCGAAAAGCTTATGTTAGAGCTGGTGAAATTGCTGAAGAGGTGATAGGCAATGTTAGAACTGTACAAGCATTTGCAGGAGAAGAAAGAGCAGTGAAATCGTATAAAGAGGCTCTCATGAAAACTTACGTCAATGGTAGAAAAGCAGGTTTAGCTAAGGGTCTGGGACTAGGCTCAATGCATTGTGTCCTTTTCCTATCTTGGTCTTTGCTTGTTTGGTTCACTAGCATTGTTGTTCACAAGAATATTGCCAATGGGGGAGAGTCTTTCACCACCATGCTCAATGTTGTCATCTCTGGCCTGTCACTTGGGCAGGCTGCTCCAGATATCTCTGCATTTATACGAGCAAAGGCAGCAGCTTATCCCATTTTTAAGATGATAGAGAGGGACACATTAAGCAAAAAAAGCTCAAAAATTGGTCGAAAATTAAGCAAATTGGAGGGGCATATCCAGTTTAAGGATGTCTGTTTCAGTTACCCATCTCGTCCGGATGTAGAAATCTTAAACAAACTCTGTCTTGACATTCCTTCAGGGAAAATTGTAGCTCTTGTGGGAGGTAGTGGTTCTGGAAAGAGCACTGTCATATCATTAATTGAACGGTTTTATGAACCCCTTTCTGGTGATATACTATTAGATGGAAATGATATCAGGGACCTTGATCTCAAATGGCTTAGGCAGCAAATTGGGCTAGTTAACCAAGAACCTGCCCTTTTTGCTACAAGCATCAAGGAAAACATACTGTATGGAAAAGATAATGCCACTCTAGAAGAGCTAAAACGTGCTGTTAAGCTTTCAGATGCTCAGTCTTTCATTAACAATCTTCCTGAAAGACTAGAAACTCAGGTTGGTGAGAGAGGGATACAACTATCAGGTGGGCAGAAGCAAAGGATTGCGATATCTCGTGCCATTGTGAAGAATCCCTCAATCCTTTTGTTGGATGAAGCAACCAGTGCTCTGGATGCTGAGTCTGAGAATAGTGTACAGGAGGCTCTTGATCGTGTCATGGTTGGTAGAACAACTGTGATAGTGGCACATAGACTTTCTACCATTAGAAATGCAGATATGATTGCTGTTGTACAGGGTGGGAGGATTGTTGAAACTGGTAACCATGAAGGGCTCATTTCTAACCCAAGTAGTGTATATGCATCTCTTGTTCAACTCCAGGAGTCAACTTCTGTGCAAAGCCTCCCCTTGGATGATCCTAGCTTGGGACGGCAATCAAGCATAACCTACTCAAGACAATTATCCCGCACAACAGCAACAGCAAGCTTAGGTGGTAGTTTTCGATCAGACAAAGAATCTATTGGCAAGGTTGAAGCAGAAAAGGGAAGCAATTCAAAGCATGTTTCAGTAGCAAGACTATATTCTATGGTTGGTCCTGACTGGTTTTATGGGGTTTTTGGAACGTTATGTGCATTTGTTGCTGGAGCACAGATGCCGCTTTTTGCCCTTGGAATCTCTCACGCACTTGTATCATACTATATGGACTGGGATACAACACGTCATGAAGTCAAAAAAATTTGTTTTCTCTTCGTTGCAGCAGCAGTGATAACTATCACCGTTCATGCCATTGAACATCTTTCTTTTGGAATCATGGGCGAGCGACTCACTCTTCGTGTGAGAGAAATGATGTTTGCGGCTATTCTGAAGAATGAGATTGGCTGGTTTGATGATACAAACAACACAAGTTCTATGCTTTCATCACGTTTAGAGAGTGATGCAACTTTATTACGGACTATAGTTGTTGATCGCTCTACAATTCTGTTACAAAATGTTGGTCTGGTTGTTGCTTCATTTATTATTGCCTTCATCTTGAACTGGAGAATAACACTTGTTGTCATAGCCACTTATCCTTTGGTCATCAGTGGTCACATCAGTGAGAAAATTTTCATGAAAGGCTATGGTGGCAACTTGAGCAAAGCATATCTAAAAGCCAACATGCTTGCTGGGGAGGCTGTGAGCAACATGCGCACTGTTGCTGCATTTTGCTCTGAAGAAAAGATCCTTGACCTTTATGCTAATGAGCTTGAAGGTCCTTCCAGACGTTCATTTCAGCGGGGCCAAATTGCTGGCATATTCTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTGTGGTATGGATCTGTTTTGATGGGAAAGGAGCTTGCTAGCTTTAAATCAGTAATGAAGTCATTTATGGTTTTGATTGTAACTGCACTGGCTATGGGGGAGACTTTGGCACTGGCCCCAGACCTTTTGAAAGGGAATCAAATGGTTGCATCAGTTTTTGAAGTGATGGATAGAAAGTCAGGAATAACAGGTGACACTGGAGAAGAGTTGAAGACTGTTGAGGGAACAATTGAGCTCAAAAGAATCAATTTCAGCTACCCTTCAAGGCCAGATGTGATAATTTTCAAGGATTTTAGTTTAAGAGTTCCTGCAGGGAAGAGTATAGCCATAGTGGGGCAAAGTGGTTCCGGTAAAAGCTCTATAATCTCCCTTATACTCAGATTTTACGATCCAACATCAGGGAAGGTGTTAATTGATGGAAAAGACATAACGAGACTTAATTTGAAATCTCTGAGGAAACATATTGGTCTTGTACAACAAGAACCTGCTCTGTTTGCAACATCAATATATGAAAATATTCTTTATGGGAAGGAAGGTGCTTCTGATTCAGAAGTAATTGAAGCAGCTAAGCTTGCCAATGCTCATAACTTCATCAGTGCTCTTCCAGATGGTTACTCTACTAAAGTAGGGGAACGAGGGGTGCAACTATCTGGTGGCCAGAAACAAAGGGTAGCCATTGCCAGAGCTGTTTTGAAGAACCCTGAGATCTTGCTTCTCGATGAAGCCACTAGCGCGCTAGATGTGGAGTCGGAGCGCGTGGTGCAGCAAGCTCTCGACAGGTTGATGCAGAACAGAACAACAGTTATGGTGGCGCATAGGCTATCCACAATAAGGAATGCAGACCAAATCTCAGTTTTGCAGGATGGGAAGATAATTGAACAAGGGAGTCATTCAAGTCTTGTAGAGAATAAAAGTGGAGCATACTTTAAACTAGTTAGCCTTCAACAACAACAGCCTCAACCATAG 3753 0.4231 MSDRGTFSGDSAAVADVVVKEGETKMEHKVPFLKLFSFADSYDWVLMAIGSVGACIHGASVPVFFIFFGKLINVIGLAYLFPKEASHKVAKYSLDFVYLSIAILFSSWIEVACWMHTGERQAAKMRMAYLRAMLNQDISLFDTEASTGEVISAITSDIIIVQDALSEKVGNFLHYISRFIAGFTIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAEVRKAYVRAGEIAEEVIGNVRTVQAFAGEERAVKSYKEALMKTYVNGRKAGLAKGLGLGSMHCVLFLSWSLLVWFTSIVVHKNIANGGESFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFKMIERDTLSKKSSKIGRKLSKLEGHIQFKDVCFSYPSRPDVEILNKLCLDIPSGKIVALVGGSGSGKSTVISLIERFYEPLSGDILLDGNDIRDLDLKWLRQQIGLVNQEPALFATSIKENILYGKDNATLEELKRAVKLSDAQSFINNLPERLETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVIVAHRLSTIRNADMIAVVQGGRIVETGNHEGLISNPSSVYASLVQLQESTSVQSLPLDDPSLGRQSSITYSRQLSRTTATASLGGSFRSDKESIGKVEAEKGSNSKHVSVARLYSMVGPDWFYGVFGTLCAFVAGAQMPLFALGISHALVSYYMDWDTTRHEVKKICFLFVAAAVITITVHAIEHLSFGIMGERLTLRVREMMFAAILKNEIGWFDDTNNTSSMLSSRLESDATLLRTIVVDRSTILLQNVGLVVASFIIAFILNWRITLVVIATYPLVISGHISEKIFMKGYGGNLSKAYLKANMLAGEAVSNMRTVAAFCSEEKILDLYANELEGPSRRSFQRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSGITGDTGEELKTVEGTIELKRINFSYPSRPDVIIFKDFSLRVPAGKSIAIVGQSGSGKSSIISLILRFYDPTSGKVLIDGKDITRLNLKSLRKHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISALPDGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMQNRTTVMVAHRLSTIRNADQISVLQDGKIIEQGSHSSLVENKSGAYFKLVSLQQQQPQP* 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0828 1250 SUPERFAMILY ABC transporter transmembrane region 34 341 IPR036640 GO:0005524|GO:0016021
Lja2g0828 1250 SUPERFAMILY ABC transporter transmembrane region 674 987 IPR036640 GO:0005524|GO:0016021
Lja2g0828 1250 Gene3D - 361 610 IPR027417 -
Lja2g0828 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 999 1244 IPR027417 -
Lja2g0828 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 344 - -
Lja2g0828 1250 ProSitePatterns ABC transporters family signature. 1145 1159 IPR017871 GO:0005524
Lja2g0828 1250 Gene3D ABC transporter type 1, transmembrane domain 654 995 IPR036640 GO:0005524|GO:0016021
Lja2g0828 1250 SMART AAA_5 1033 1219 IPR003593 -
Lja2g0828 1250 SMART AAA_5 398 590 IPR003593 -
Lja2g0828 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 336 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g0828 1250 Pfam ABC transporter transmembrane region 688 959 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g0828 1250 Pfam ABC transporter transmembrane region 49 319 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g0828 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 609 IPR027417 -
Lja2g0828 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1006 1242 IPR003439 GO:0005524
Lja2g0828 1250 Pfam ABC transporter 389 538 IPR003439 GO:0005524
Lja2g0828 1250 CDD ABC_MTABC3_MDL1_MDL2 1006 1244 - -
Lja2g0828 1250 ProSitePatterns ABC transporters family signature. 510 524 IPR017871 GO:0005524
Lja2g0828 1250 CDD ABC_MTABC3_MDL1_MDL2 371 609 - -
Lja2g0828 1250 Gene3D - 996 1249 IPR027417 -
Lja2g0828 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 687 973 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g0828 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 676 991 - -
Lja2g0828 1250 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 23 1246 - -
Lja2g0828 1250 Pfam ABC transporter 1025 1173 IPR003439 GO:0005524
Lja2g0828 1250 Gene3D ABC transporter type 1, transmembrane domain 34 616 IPR036640 GO:0005524|GO:0016021
Lja2g0828 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 371 607 IPR003439 GO:0005524
Lja2g0828 1250 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 23 1246 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0828 Lja-Chr2 7710458 7720449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0828 40 626 Calmodulin-binding Proteins AT2G36910 37.983 1.74e-112 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0828 K05658 - gmx:100819045 2145.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0828 2 7710458 7720449 Lja2g0828 2 7710458 7720449 ECH