Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0826 ATGAGAAGAAACCACCATCAATCCTCCACTGCTAACAATCGAGGACGACCGCAACAGTATCGCCCCAAATTCACATCCCGCTATGTCACCAAATCCCAACTCGTTCCTCCTCCTCCTGCTCCCAACTCTGTGGCGGCGGAACAAGCTGCACCTGATGATGACCATGTTGGGAAAAATCACCACAAAGGTGCATCAGAGTCAGAGCTGAACGGTAGCAACATTGATGAGACGAATCACGTAGCTGGTCCAAGCGAGGCCAACCAAGAAGATGATGATATCAATGATCTCATGGGGAGGCTTGATAAGTTGCTCACTGAAATTGATCAACCTGGTGAATTGTCCGAGGACCAGATCGCTATCAATGACCAATTGCAGCAAGATGAGTTGCTAGTGGTGGAGTCAATTTATGGAGAAAACGTTTTCAGCCTTGAGAGATGGAAAGGCCTTCGTTGTTTTCAGATACACATATGCATTGATATTTTGGGCGAAATTGCAATTATCGCTAAGCTGAACTCTTCTAATGATCTTGAGACTGTAAGCAGTAATTCAGATGACTTCTTGTACTCTTTCAAAGTCCGGTATCTTCCACCTATTGTATTGACATGTTTATTACCTAAGTCATACCCAAGCCACCAACCACCTATATTTACAATCTCTGTCAAGTGGTTGGAACCCTTAAAGATTTTAAGTTTATGTTCTGAGTTGGACTCAATATGGGAAGAGCAGCAAGGGCAGGAAGTAATTTACCATTGGGTAGAATGGTTACATGGTTCTTCTCTTTCTCATCTGGGATTTGATAAGGAGATTACACTAGGTCCTTGTGACGTCAATCGTGTTGTAGACAAGCGGGTGGTTTCAGGAACCAAAAGCATTGATCTTGATATTCCTTTTTTACGAAGTTATAACAATGAGAAACACCATGAGAACTTCCTAAAAGAATTGCATGAATGTTGCATATGCTACAGTGAATATCCAGGTACTGAATTCGTCCAGTTACCATGCAAGCATTTTTTTTGCCGCAAGTGTTTGCAGACCTTTACGCAGATACATGTAAAAGAAGGCACTGTTGGTAATCTTGAATGTCTTGATGCAAAATGTAAGGTTATGATTCCACCTGGCCTCTTAAAGCACCTACTGGCTGATGAAGATTATGAACGCTGGGAATCCATGATGTTGGAGAAAACACTTGCGTCAATGTCTGATGTTGTTCATTGCCCAAGATGTGAAACACCTTGTATAGAAGATGAAGACCATCATGCTCAATGCCCTCAGTGCTTTTTTAGCTTCTGTACCCTTTGTAGGGAACGGCGGCATGTTGGCATAGCATGCATGACGCTGGAGATGAAGATTCAGATTTTGAAAGTAAGTGGACTCAATATTGGATAA 1386 0.4242 MRRNHHQSSTANNRGRPQQYRPKFTSRYVTKSQLVPPPPAPNSVAAEQAAPDDDHVGKNHHKGASESELNGSNIDETNHVAGPSEANQEDDDINDLMGRLDKLLTEIDQPGELSEDQIAINDQLQQDELLVVESIYGENVFSLERWKGLRCFQIHICIDILGEIAIIAKLNSSNDLETVSSNSDDFLYSFKVRYLPPIVLTCLLPKSYPSHQPPIFTISVKWLEPLKILSLCSELDSIWEEQQGQEVIYHWVEWLHGSSLSHLGFDKEITLGPCDVNRVVDKRVVSGTKSIDLDIPFLRSYNNEKHHENFLKELHECCICYSEYPGTEFVQLPCKHFFCRKCLQTFTQIHVKEGTVGNLECLDAKCKVMIPPGLLKHLLADEDYERWESMMLEKTLASMSDVVHCPRCETPCIEDEDHHAQCPQCFFSFCTLCRERRHVGIACMTLEMKIQILKVSGLNIG* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0826 461 MobiDBLite consensus disorder prediction 10 32 - -
Lja2g0826 461 MobiDBLite consensus disorder prediction 66 84 - -
Lja2g0826 461 MobiDBLite consensus disorder prediction 1 92 - -
Lja2g0826 461 Pfam IBR domain, a half RING-finger domain 385 443 IPR002867 -
Lja2g0826 461 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 106 453 IPR031127 GO:0004842|GO:0016567
Lja2g0826 461 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 106 453 - -
Lja2g0826 461 ProSiteProfiles RWD domain profile. 127 262 IPR006575 GO:0005515
Lja2g0826 461 SMART ibrneu5 385 443 IPR002867 -
Lja2g0826 461 ProSiteProfiles TRIAD supradomain profile. 313 461 IPR044066 -
Lja2g0826 461 SUPERFAMILY UBC-like 121 256 IPR016135 -
Lja2g0826 461 SUPERFAMILY RING/U-box 385 447 - -
Lja2g0826 461 SMART ring_2 317 408 IPR001841 -
Lja2g0826 461 Pfam RWD domain 123 256 IPR006575 GO:0005515
Lja2g0826 461 SMART RWD2001b 127 262 IPR006575 GO:0005515
Lja2g0826 461 MobiDBLite consensus disorder prediction 51 65 - -
Lja2g0826 461 Coils Coil 86 106 - -
Lja2g0826 461 Gene3D Ubiquitin Conjugating Enzyme 114 263 IPR016135 -
Lja2g0826 461 ProSiteProfiles Zinc finger RING-type profile. 317 361 IPR001841 -
Lja2g0826 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 400 IPR013083 -
Lja2g0826 461 SUPERFAMILY RING/U-box 312 396 - -
Lja2g0826 461 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0826 Lja-Chr2 7690535 7694606 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0826 317 446 ARIADNE family AT1G05890 27.206 6.32e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0826 K11971 - gmx:100500662 629.402