Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0825 ATGACCGTTTTGGAAAACTTCACCTCAGATGAAATTGAAAAACCTGAACTGAACAGTAGCAACGTTGTCGAGCAACATGGCGTGGCTAGTTCAAGCGGGACTAAGGAAGAGGATGATGATAATGATATCATGGGTCGGCTTGATAAGTTACTCAGTAAAATTGAAGAACCTGGAGAATTGTCCGAGGAGCAGACCACAATCAATGACCAATTGCAGCAAGATGAGTTGCTTGTGCTGGAGTCAATTTATGGAGAAAACTTTGTCACCCTCGAGAGTTGGAAAGGCCTTCGTTGCTTGCAGATACACATATGCATTGATGTTTTGGATGAAATTGCAATTACAGCTAAGCTGAACTCTTCTGATGAACTTGAGACTTTAAGCAGCAATTCAGATGACTTCTTGTACTCTTTCAAAGTTCAGTATCTTCCACCAATTGTTTTGACATGTTTATTACCTAAGTCATACCCAAGCCACCAACCACCTATATTTACAATCTCTGTCAAGTGGTTGGAACCCATAAAGATTTTGAATCTATGTTCTGAGTTGGATTCAATATGGGAAGAACAGCAAGGGCAGGAAGTAATTTACCATTGGGTAGAATCAATACATGGTTCTTCTCTTTCTCGTCTGGGATTTGATAAGGAGATTACACTAGGTCCTTATGGCGTCAATCGTGTTGAAGACAAGCGGGTGGTTTCAGAGACCGAAGGCATTGATGTTGATATTCCTTTTTTACGAAATTATAACAATGAGAAACAACATGAGAACTTCCTCAAAGAATTGCATGAATGTTGCATTTGCTATAGTGAATATCCAGGTACTGAGTTTGTCCAGTTACCATGCAAGCATTTCTTTTGCCGCAAATGTTTGCAGACCTTTACCCAGATACATGTAAAAGAAGGCACTATTTCTAGTCTTCAATGTCTTGATACAAAATGTAAGGTTATGATTCCACCTGGCCTTTTAAAGCACCTGCTGGCTGATGAAGATTATGACCGCTGGGAATCCATGATGTTGGAGAAAACACTTGCGTCAATGTCTGATGTTGTTTATTGCCCAAGATGTGAAACACGTTGTATAGAAGATGAAGACAAGCATGCTCAATGCCCTGAATGCTTTTTTAGCTTTTGTACCCTTTGCAGAGATCGACGGCATGTTGGCATAGCTTGCATGACCCTGGAGATGAAACTTCAGATTTTACGAGTAAGTGGACTTGATATTGGTTAA 1227 0.4018 MTVLENFTSDEIEKPELNSSNVVEQHGVASSSGTKEEDDDNDIMGRLDKLLSKIEEPGELSEEQTTINDQLQQDELLVLESIYGENFVTLESWKGLRCLQIHICIDVLDEIAITAKLNSSDELETLSSNSDDFLYSFKVQYLPPIVLTCLLPKSYPSHQPPIFTISVKWLEPIKILNLCSELDSIWEEQQGQEVIYHWVESIHGSSLSRLGFDKEITLGPYGVNRVEDKRVVSETEGIDVDIPFLRNYNNEKQHENFLKELHECCICYSEYPGTEFVQLPCKHFFCRKCLQTFTQIHVKEGTISSLQCLDTKCKVMIPPGLLKHLLADEDYDRWESMMLEKTLASMSDVVYCPRCETRCIEDEDKHAQCPECFFSFCTLCRDRRHVGIACMTLEMKLQILRVSGLDIG* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0825 408 ProSiteProfiles TRIAD supradomain profile. 260 408 IPR044066 -
Lja2g0825 408 SMART ibrneu5 332 390 IPR002867 -
Lja2g0825 408 MobiDBLite consensus disorder prediction 1 30 - -
Lja2g0825 408 Pfam RWD domain 70 203 IPR006575 GO:0005515
Lja2g0825 408 ProSitePatterns Zinc finger RING-type signature. 281 290 IPR017907 -
Lja2g0825 408 MobiDBLite consensus disorder prediction 1 42 - -
Lja2g0825 408 Pfam IBR domain, a half RING-finger domain 333 390 IPR002867 -
Lja2g0825 408 SMART RWD2001b 74 209 IPR006575 GO:0005515
Lja2g0825 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 348 IPR013083 -
Lja2g0825 408 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 54 400 IPR031127 GO:0004842|GO:0016567
Lja2g0825 408 SUPERFAMILY UBC-like 68 202 IPR016135 -
Lja2g0825 408 SUPERFAMILY RING/U-box 332 395 - -
Lja2g0825 408 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 54 400 - -
Lja2g0825 408 ProSiteProfiles RWD domain profile. 74 209 IPR006575 GO:0005515
Lja2g0825 408 Gene3D Ubiquitin Conjugating Enzyme 60 208 IPR016135 -
Lja2g0825 408 SUPERFAMILY RING/U-box 259 343 - -
Lja2g0825 408 ProSiteProfiles Zinc finger RING-type profile. 264 308 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0825 Lja-Chr2 7684137 7686983 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0825 266 395 ARIADNE family AT2G16090 23.188 8.34e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0825 K11971 - gmx:100500662 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0825 2 7684137 7686983 Lja2g0825 2 7684137 7686983 ECH