Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0824 ATGGACGGAGATGGAGGCGGCGGCGGCGGCGGTTCAGCCCCGTTGCCGGTGCCGACGCCGATGTCAAACTCGACTGCGCCGCCACCGTTTCTGAGCAAGACGTATGACATGGTGGATGACCCTGCAACGAACTCGATAGTGTCTTGGAGCGCAACCAACAACAGCTTCGTGGTTTGGGATCCACCGGAATTTGCAAGGGACCTCTTGCCTAAGTACTTCAAGCACAACAACTTCTCCAGCTTCGTCAGGCAGTTGAATACATATGGTTTCAGGAAGGTTGATCCTGATCGATGGGAATTTGCAAATGAAGGCTTTTTGAGGGGTCAAAAGCACTTGCTCAGGAGTATAACTCGACGTAAACCTGCCCATGGCCAGACTCAACAGGCTCAACAACCACATGGACAGAGTTCATCAGTAGGGGCATGTGTAGAAGTTGGGAAGTTTGGGCTTGAGGAAGAGGTTGAGAGGCTTAAAAGAGACAAGAATGTGCTCATGCAAGAGCTTGTGAGGTTGAGACAGCAGCAACAGACCACTGATAGCCAGCTGCAAACAATGGTTCAACGCCTTCAGGGAATGGAGCAACGACAACAGCAAATGATGTCATTCCTGGCCAAAGCTGTCCAGAGCCCTGGCTTCTTTGCTCAGTTTGTACAGCAAAATGAGAGCAATAGGCGCATATCTGAAGTCAGCAAAAAGCGCCGGCTCAAGCCGGACGGCAATGCTGAAACAGAGCGTGCTGCTGCACCTGATGGACAAATTGTTAAATATCAACCTCTGATTAATGAAGCTGCAAAAGCAATGCTAAAGCAGATTATGAAATGGGATACTTCTCGTGTAGAATCTTTTAATAAGAACCCCAACAATTACTTGATTGGTGATGACTCATCATCCGGTGCAATGGACAGTAGCAGCTCTTCAAGCTGGACTTCTGGAGCAACTCTTCAAGAGGTTCCTCCAGCTTCAGTGCAGCCTTCTCACATTCCAGATTCTACAGGGACTCAAGCACATATTCCCTCCGCTGAGAAACCTGTAATTGTATCTGTACCACAAGCTGCTGTTTCCGAAAAAGTTATAAAGAACAGAGCACATGAGGCGCCTACAATGCCTGTTTCTCAAGCAGATGTGATCATGCCTGATATATCGTCAATACCAACAGAGATAGTGCCAGGAAGTATTCTTGATATTCCTGAAGAAAATTACACGGCTCCTGAGAAAGATGAGGGATATATGGATCCTACTTCACTGGGAGTTGATGAATTTCCCTTTGATTTTGAAGGTATTTCACCTGATGGAGACATTGATGACTTATTAGGCAATTCTTCTCTTTGGGATGATCTTTTGCGATCGCCAATTCCAGAGGGTATCGAGACGGATGTTGCTGAAGTATCCCAAGGGAATAAGATGCAGCCAACCGAAAATGGATGGGACAAAAAACATATGGATCAACTTACAGAGCAGATGGGTCTTCTTTCTTCTGATACAGAAAGAGTTTGA 1494 0.4672 MDGDGGGGGGGSAPLPVPTPMSNSTAPPPFLSKTYDMVDDPATNSIVSWSATNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSITRRKPAHGQTQQAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDSQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQNESNRRISEVSKKRRLKPDGNAETERAAAPDGQIVKYQPLINEAAKAMLKQIMKWDTSRVESFNKNPNNYLIGDDSSSGAMDSSSSSSWTSGATLQEVPPASVQPSHIPDSTGTQAHIPSAEKPVIVSVPQAAVSEKVIKNRAHEAPTMPVSQADVIMPDISSIPTEIVPGSILDIPEENYTAPEKDEGYMDPTSLGVDEFPFDFEGISPDGDIDDLLGNSSLWDDLLRSPIPEGIETDVAEVSQGNKMQPTENGWDKKHMDQLTEQMGLLSSDTERV* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0824 497 MobiDBLite consensus disorder prediction 290 341 - -
Lja2g0824 497 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 12 484 - -
Lja2g0824 497 MobiDBLite consensus disorder prediction 224 249 - -
Lja2g0824 497 MobiDBLite consensus disorder prediction 225 243 - -
Lja2g0824 497 MobiDBLite consensus disorder prediction 1 28 - -
Lja2g0824 497 Gene3D - 22 120 IPR036388 -
Lja2g0824 497 Coils Coil 147 174 - -
Lja2g0824 497 MobiDBLite consensus disorder prediction 119 138 - -
Lja2g0824 497 Pfam HSF-type DNA-binding 30 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g0824 497 SMART hsfneu3 26 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g0824 497 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g0824 497 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g0824 497 PRINTS Heat shock factor (HSF) domain signature 30 53 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g0824 497 SUPERFAMILY "Winged helix" DNA-binding domain 26 119 IPR036390 -
Lja2g0824 497 MobiDBLite consensus disorder prediction 120 138 - -
Lja2g0824 497 MobiDBLite consensus disorder prediction 290 337 - -
Lja2g0824 497 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 484 IPR027725 -
Lja2g0824 497 ProSitePatterns HSF-type DNA-binding domain signature. 69 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0824 Lja-Chr2 7674854 7679028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0824 4 494 HSF AT1G32330 54.280 4.58e-166 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lja2g0824 HSF_DNA-bind 4.7e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0824 K09419 - gmx:100815121 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0824 2 7674854 7679028 Lja2g0824 2 7674854 7679028 ECH