Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0823 ATGACATTGGTTATTAGAGAGAGGAGACACAAGCAAGCTCTAACACTTTCCTTGCCAAAACCTAAGATTCCACCCTCTGATTTCCCATACCAAACTCACACACCACCATTGTTTTCATCACCATCCTCTCATTTAATAAACTCTTGTTCATACATCAGAAACATTTCAGACCTTGAGAAAGTAGCAGTACTTGGCCATGGCTATGGTGGAACTGTCTACAAAGTCCATCACAAGGAAAACCATTCCTTCTATGCATTGAAAGTGAGACGCTTCAAGACACTCGAGGCTGAGATTCTCAAACGAGTGGATTCCCCATATATAGTGAAGTGTCATGCAGTTTTTGACAATGGTGCTTGCAGTGAATCTGATAACAATGGAGGTGGTGATCTCAGCTTTGTCATGGAATACATGGAACGAGGGTCACTGGATGATGTCTTGAGAGAACATCACAGATTGCCAGAGGAGGTGATCTCTGTCATGGCTAACCGTGTCTTGGAAGGGCTTAAGTACTTACATGGCATGAAAATTGTGCATAGAGATATTAAACCTTCAAACTTGCTTGTGAATGATAAAGGGGAGGTGAAAATTGCAGATTTTGGAGTGAGTCATGTAGTGGAAGAGGAAGCTGACTCCAATGATGGCACATATGCATACATGAGCCCTGAGAGATTCGATCTTTCGAGATGGGGTGGTGAAAATGTTGATGAGTTTGCAGGAGATGTGTGGTCTTTGGGAGTGGTGATGTTGGAATGCTTTTTAGGCCATTTCCCCTTCATTGATCCAGGGCAAAAACCAGATTTGGTAACTTTGGTGTGTGCAATTTGCTTTGGTGAGAAGTTGGAGATGCCGGAGGAGGCGTCCCCGGAGTTTCAAAGTTTTGTGAAGAGGTGTCTTGAGAAGGATTGGAGGAAGAGAGCAACTGTGTTGGAGCTTCTTCACCACCCTTTTGTGAACAGAAACTGGAGGAAGGAAGAGACAAACAGAAATAGAAAAATATGGAAATATAGAAAAATATGGAAATATTGTTGA 1029 0.4257 MTLVIRERRHKQALTLSLPKPKIPPSDFPYQTHTPPLFSSPSSHLINSCSYIRNISDLEKVAVLGHGYGGTVYKVHHKENHSFYALKVRRFKTLEAEILKRVDSPYIVKCHAVFDNGACSESDNNGGGDLSFVMEYMERGSLDDVLREHHRLPEEVISVMANRVLEGLKYLHGMKIVHRDIKPSNLLVNDKGEVKIADFGVSHVVEEEADSNDGTYAYMSPERFDLSRWGGENVDEFAGDVWSLGVVMLECFLGHFPFIDPGQKPDLVTLVCAICFGEKLEMPEEASPEFQSFVKRCLEKDWRKRATVLELLHHPFVNRNWRKEETNRNRKIWKYRKIWKYC* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0823 342 SMART serkin_6 58 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0823 342 ProSiteProfiles Protein kinase domain profile. 58 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0823 342 ProSitePatterns Protein kinases ATP-binding region signature. 64 87 IPR017441 GO:0005524
Lja2g0823 342 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 5 320 IPR045269 GO:0004674|GO:0006914
Lja2g0823 342 CDD PKc_MAPKK_plant_like 56 318 - -
Lja2g0823 342 Pfam Protein kinase domain 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0823 342 PRINTS Tyrosine kinase catalytic domain signature 239 261 IPR001245 GO:0004672|GO:0006468
Lja2g0823 342 PRINTS Tyrosine kinase catalytic domain signature 170 188 IPR001245 GO:0004672|GO:0006468
Lja2g0823 342 PRINTS Tyrosine kinase catalytic domain signature 134 147 IPR001245 GO:0004672|GO:0006468
Lja2g0823 342 SUPERFAMILY Protein kinase-like (PK-like) 29 325 IPR011009 -
Lja2g0823 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Lja2g0823 342 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 10-LIKE 5 320 - -
Lja2g0823 342 Gene3D Transferase(Phosphotransferase) domain 1 51 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0823 Lja-Chr2 7670844 7673242 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0823 1 317 MAP Kinase Kinase Gene Family AT1G32320 52.174 4.02e-105 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Lja2g0823 Pkinase 4e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0823 K20604 - gmx:100817973 487.263