Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0821 ATGAGCTTTCAGGACATCGAGGCCGGCAGGCCTCTCGCTTCCCGCCGCAACCTCATCAACGGCAACCAACAAGACCCCACGCAGGCGGTTGCCGCCGGCGTATTTCAGATCAACACCGCCGTCTCAACGTTCCAGAGGCTCGTTTACACCCTCGGAACCCCCAAAGACACCCCCGAGCTTCGCAATAAACTGCACAAGACGAGGCTTCACATTGGACAATTGGTGAAGGATACATCGGCAAAACTTAAGCAAGCTAGTGAGATTGATCATCATGCTGGTGTTAATGTAACCAAGAAGATAGCAGATCAAAAACTTGCCAAAGATTTTGAGGCAGTGTTGAAAGAATTTCAGAAGGCACAGCGACTTGCAGCTGAGAGGGAAACAGCTTACACTCCATTTGTTCCACCATCCAGTGGTACAGCCAGCGAAGTAGGCATAAGTTCTGATAAGAGTCCGGAACAGCGTGCCCTTCTTGTTGAATCCAGAAGACAGGAGGTAGTGTTCTTGGATAATGAGATTTCGTTCAACGAGAGTATCATTGAGGAAAGAGAGCAAGGAATTCAAGAAATCCAACAGCAAATTGGTGAAGTAAATGAGATTTTCATAGATCTTGCGAGGCTTGTTCATGAGCAAGGAGCAACGATTAGTAACTTTTTCTCTCCTTTTTGCTTTTGCTATTTTAGCACCCTTGTATCAACTTTTAGACTGGTGTATCCGTGTATGGTATTTGATGTCATGAATTTCTATTTCGTAGATGATATTGGGTCCAACATCGAGCATTCCCATGAAGCAACTGAACAAGCAAAATCTCAGCTAGCCAAAGCTTCAAATACTCAAAGATCAAATTCTTCTTTGGCATGTTTGCTTTTGGTAATATTTGGAATCGTGCTTCTCATCATCATCATCGTTGTTGCTGCTTAG 921 0.4463 MSFQDIEAGRPLASRRNLINGNQQDPTQAVAAGVFQINTAVSTFQRLVYTLGTPKDTPELRNKLHKTRLHIGQLVKDTSAKLKQASEIDHHAGVNVTKKIADQKLAKDFEAVLKEFQKAQRLAAERETAYTPFVPPSSGTASEVGISSDKSPEQRALLVESRRQEVVFLDNEISFNESIIEEREQGIQEIQQQIGEVNEIFIDLARLVHEQGATISNFFSPFCFCYFSTLVSTFRLVYPCMVFDVMNFYFVDDIGSNIEHSHEATEQAKSQLAKASNTQRSNSSLACLLLVIFGIVLLIIIIVVAA* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0821 306 CDD SynN 24 139 IPR006011 GO:0016020
Lja2g0821 306 Pfam SNARE domain 251 301 IPR000727 -
Lja2g0821 306 Gene3D - 19 135 - -
Lja2g0821 306 Gene3D - 247 306 - -
Lja2g0821 306 PANTHER SYNTAXIN 2 218 IPR045242 -
Lja2g0821 306 PANTHER SYNTAXIN 250 305 IPR045242 -
Lja2g0821 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 177 218 IPR000727 -
Lja2g0821 306 SMART SynN_4 15 128 IPR006011 GO:0016020
Lja2g0821 306 Gene3D - 178 218 - -
Lja2g0821 306 SMART tSNARE_6 172 275 IPR000727 -
Lja2g0821 306 Pfam Syntaxin-like protein 31 130 IPR006011 GO:0016020
Lja2g0821 306 SUPERFAMILY t-snare proteins 24 212 IPR010989 GO:0016020|GO:0016192
Lja2g0821 306 PANTHER SYNTAXIN OF PLANTS PROTEIN 2 218 - -
Lja2g0821 306 PANTHER SYNTAXIN OF PLANTS PROTEIN 250 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0821 Lja-Chr2 7658169 7666493 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0821 1 294 SNARE and Associated Proteins AT5G46860 64.094 5.15e-127 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0821 - K08488 gmx:100810149 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0821 2 7658169 7666493 Lja2g0821 2 7658169 7666493 ECH
Lja2g0821 2 7658169 7666493 Lja4g2789 4 46029865 46034173 PCT