Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0811 ATGTCATTCTCTCTATCTCTCTCTTTCCTCTCTCTGTTCCTTCCTTCGCCGCGAAACCTCTTCTCCGCCGCCGGTAACCGCTTCTACATTTCGATGACCAAATTCCGCGTCTCTGTAGGAAGCTGGTGTTGGATCTCTCTGCGAAGCGGTGACGGTGTTGTTTTCGTTGCTGTTCGAGAATGTGGTGAGCCTGGTTGGGTTGTGAGGCTTGCTTTCAATCTGCATCCGAAGACGGGGACCTATAGGGAGCGACTCCGGAATGAAATGGTTGAACGAAGATCAAGTTTATCTAAGGAAGCTAGAAATGGGTTAGAATTTTTGAAGCGTAAAAGGCTTCAGAACGCAAATATGATGAACAGAAGTGGTGGAGATGCTTTAAGATCTTCGGGATCTTGTGGCATGGGATTGCAAGGGAGTGCAGATGCCTTTTCCAAGCGGAAGGTGGATAAGTTTGACACAAGTAATCTGGAATGGACTGATAAGATTATGGAGTGTCCTGTGTATTCTCCAACAAAGGAGGAATTTCAGGATCCTTTAATTTATTTGCAAAAAATAGCTCCTGAAGCTTCTAAATATGGCATATGCAAGATTGTTTCACCTTTGAGTGCTTCTGTACCTGCTGGGGTTGTTTTGATGAAGGAGAAAGCAGGATTCAAGTTTACAACTAGAGTGCAGCCCCTTCGCCTTGCCGAATGGGATACTGAAGACAAAGTCAAATTTTTTATGAGTGGAAGAAATTATACATTACGTGATTTTGAGAAAATTGCGAACAAGATTTTTGCACGAAGATACTGCAGTGCTGGAGGTCTTCCTCCTACGTACTTGGAAAAAGAGTTTTGGCATGAAATCGGTTGTGGGAAAATGGAAACTGTTGAATATGCATGTGATGTTGATGGCAGTGCTTTCTCATCTTCTCCCACAGATCCACTTGGGAACAGCAAATGGAATTTGAAGAAACTTTCGCGGTTGCCCAAATCAATCTTGCGGTTCTTGGAAACGTCAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTGTTTAGTATGTTTGCTTGGCATGTGGAGGATCATTATTTGTACAGCATTAATTATCAACACTGTGGGGCATCAAAAACATGGTACGGCATTCCAGGTCAAGAAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACATGTGTATACTACTGATATTTTGTCAAGTGATGGGGAAGACGGAGCTTTTGATGTTCTCCTGGGGAAAACAACACTATTTCCGCCAAATATCTTGCTGGAGCATGGAGTCCCTGTCTACAAGGCTGTTCAGAAGCCAGGGGAATTTATAATAACCTTCCCTAGAGCATATCATGCTGGCTTCAGTCATGGTTTCAACTGTGGAGAAGCTGTGAATTTTGCACTTGGTGATTGGTTTCCTCTAGGGGCTACTGCTAGCCGGAGATATGCATTTCTTAACAGGGTTCCTTTGCTTCCCCATGAAGAACTTCTTTGCAAAGAAGCAATGCGGCTCTGTAAATGCTTGGAACTTGAAGATCCAGACTTTCCCTCTTTAGACTTGATTTCTCATAATAGCACTAAGATTTCTTTTGTTAATTTGATGCGTTTCCAACACTGTGCTCGCTGGTTCCTAATGAAATCAAGGGTCCGTATTAATCTCTCTCTTCATTCACATGGCACGATTCTCTGTAGCCTCTGCAAACGTGACTGTTATATAGCTTATGTTGACTGCAACTGTCACGAGCATCCTGTCTGCGTACGTCATGATGTCGAATCTCTTGCCTTCAAGTGTGGAAGCAAGCACACTCTTCGTTTGAGGGAGGACATTGTGAATATGGAAGATGCAGCCAAGAAGTTTGAGCAGGAAGATGGAGTATTGGAGGAGTTAAGCAAGCAAACCGAAACTGATCAAAATATGTATTCATATCCTTTGTCAGATTTGTTTCAGAGAGCTGAGGCAAATGGATACGTGCCTTATTGCGAGCTTAAACTTGATTCTGATTTTGAGTGTTATACAACTCCAGAACAGTCAAATAATCAAGAGTGTGCTACACAAAGTGTTTTCAGACATAGCTCTGAAAATTATAAAGAAGTGTCTGATGTTTCCTTTTCTTCTGCTGCATCCACTCTTTGTTCTCTCTCAGAACCTCTTGAGAGCTCCTCTGCTCCCAGAAATGCCGAGGGGCATAGTAACTTAAATTTAGGCACTATTGATTTTCAAGACCTTGGTGAAAGGATATCTAACAGTGCATGCGAATCTTCACTATCTCCTGCTCTTTATCATGAAAGCTCAGCTAAACCGCAGGGTGGTCTTCAGCGATACGACACAAAGCCCATTGTGGATAATGAAAGTGATGATTCTGATTCAGGGATGTTTAGGGTAAAGCGCCCTTCAGCTCTGAAAGCAGAGAGGAGAAATGTGAACAAGGTTTTGTCTTCAAAGAATTCTGAGCAGCAGGGACTTAATCGACTGAAGAAAGTCCGTCCTGAAGGAAAATGCAGACAACCAATGGACCTCAGCAGAAGCAATGAATCAAGTTTCAAATTTAATAGTTATCCTGATACTCATAAAGTTTATGGCGATATTTCCTCAAAGGACAGGTCTGCTAGGGGAAATGGCATTCCCATTTCAGTAAGGTATAAGAAGCCATGCAACGGGGAATTAAGTGTGCAACGAGATCACCACCGGAGCGATAGGTTGCAGCAAACTTCTAGGGAACCGCCTTCCATTGAGTTAGGGACAAAGCGCCTAAAAGTCCGAGGCCCCTCATTTTTGGGCTTAGAGAGCAGATTGAGTTGA 2796 0.4313 MSFSLSLSFLSLFLPSPRNLFSAAGNRFYISMTKFRVSVGSWCWISLRSGDGVVFVAVRECGEPGWVVRLAFNLHPKTGTYRERLRNEMVERRSSLSKEARNGLEFLKRKRLQNANMMNRSGGDALRSSGSCGMGLQGSADAFSKRKVDKFDTSNLEWTDKIMECPVYSPTKEEFQDPLIYLQKIAPEASKYGICKIVSPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVKFFMSGRNYTLRDFEKIANKIFARRYCSAGGLPPTYLEKEFWHEIGCGKMETVEYACDVDGSAFSSSPTDPLGNSKWNLKKLSRLPKSILRFLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYQHCGASKTWYGIPGQEALEFERVVREHVYTTDILSSDGEDGAFDVLLGKTTLFPPNILLEHGVPVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFALGDWFPLGATASRRYAFLNRVPLLPHEELLCKEAMRLCKCLELEDPDFPSLDLISHNSTKISFVNLMRFQHCARWFLMKSRVRINLSLHSHGTILCSLCKRDCYIAYVDCNCHEHPVCVRHDVESLAFKCGSKHTLRLREDIVNMEDAAKKFEQEDGVLEELSKQTETDQNMYSYPLSDLFQRAEANGYVPYCELKLDSDFECYTTPEQSNNQECATQSVFRHSSENYKEVSDVSFSSAASTLCSLSEPLESSSAPRNAEGHSNLNLGTIDFQDLGERISNSACESSLSPALYHESSAKPQGGLQRYDTKPIVDNESDDSDSGMFRVKRPSALKAERRNVNKVLSSKNSEQQGLNRLKKVRPEGKCRQPMDLSRSNESSFKFNSYPDTHKVYGDISSKDRSARGNGIPISVRYKKPCNGELSVQRDHHRSDRLQQTSREPPSIELGTKRLKVRGPSFLGLESRLS* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0811 931 Pfam C5HC2 zinc finger 562 612 IPR004198 -
Lja2g0811 931 MobiDBLite consensus disorder prediction 859 916 - -
Lja2g0811 931 Coils Coil 601 631 - -
Lja2g0811 931 MobiDBLite consensus disorder prediction 777 809 - -
Lja2g0811 931 SUPERFAMILY Clavaminate synthase-like 243 500 - -
Lja2g0811 931 SMART cupin_9 309 482 IPR003347 -
Lja2g0811 931 MobiDBLite consensus disorder prediction 758 821 - -
Lja2g0811 931 Pfam JmjC domain, hydroxylase 342 465 IPR003347 -
Lja2g0811 931 Pfam jmjN domain 166 198 IPR003349 -
Lja2g0811 931 ProSiteProfiles JmjC domain profile. 312 482 IPR003347 -
Lja2g0811 931 SMART JmjN_1 164 205 IPR003349 -
Lja2g0811 931 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 130 927 - -
Lja2g0811 931 MobiDBLite consensus disorder prediction 885 901 - -
Lja2g0811 931 Gene3D Cupin 165 513 - -
Lja2g0811 931 ProSiteProfiles JmjN domain profile. 165 206 IPR003349 -
Lja2g0811 931 PANTHER LYSINE-SPECIFIC DEMETHYLASE 130 927 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0811 Lja-Chr2 7467879 7473973 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0811 133 633 JUMONJI Transcription Factor Family AT2G34880 32.753 3.21e-66 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lja2g0811 JmjC 2e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0811 - - gmx:100798611 1357.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0811 2 7467879 7473973 Lja2g0811 2 7467879 7473973 ECH