Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0810 ATGTATGGGGATTGCCAAGTCATGTCAGATACTCTCTTCTCGTCACCGATCCAGAACCCTAACTTCAACTTCATCTCCACCATGCCTTTTCACCCTTTTCCTCCCATGAAAGAAGAAGATTCTATGTTGGGAGGGAAAGAAGAGATGGAAAGTGGTTCTGAAAGTGAACAAGTTGAAGACAAGTCCGGGAACGAGCAAGAGATCACTGAACAGCCTAAGAAAAAACGTTATCACAGGCACACTGCTCGCCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCACACCCGGATGATAAGCAAAGGATGAAACTAAGCCATGATCTAGGCCTAAAACCACGCCAGGTCAAGTTCTGGTTCCAAAACCGCCGAACCCAGATGAAGGCACAGCAAGATCGATCAGATAATGTGATACTTAGAGCTGAGAATGATAGTCTAAAGAATGAGAACTATCGGTTACAAGCAGCGCTGCGTAGTATTATATGTCCAAATTGTGGTGGCCCGTGCATGATGGGCGCGGAAATGGGCTTGGATGAACAGCAGCTTCGCCTTGAAAATGCTCGGTTGAGAGAAGAGTTGGAACGTGTATGTTGTATCACTTCAAGATACACTGGTCGCCACATCCAGACTATGGCAGCTTCTCCTGCTCTCATGGCTCCTTCATTGGATCTGGACATGAACATCTACTCAAGGCACTTTGGGGAAACCCTTCCTCCCTGCACAGAAATGATTCCTGTGCCAATGCTACCTCCTGAAGCTTCACCATTTCACCAAGAAGACGGTCTGTTAATGGAAGATGAGAAGCCCCTTGCCATGGAGCTTGCAGCGTCTTCAATGGCTGAGCTAGTGAAGATGTGCCGCACAAACGAGCCACTGTGGATCCGAAGCAGTACTGATAGTGAAAGGGAAGTGCTTAATTTTGAAGAGCACGCGAGGATGTTTCCATGTCCTCTGAGCCTAAAGCACCAAAGTGAAATGAGGACTGAAGCTACCCGTGACACTTCTGTGGTTATAATGAATAGTGTCACTCTTGTTGATGCTTTTCTTGATGCACAAAAATGGATGGAGCTGTTTCCTTCAATTGTTTCTAGCGCAAAAACTGTCCAAATTATATCTTCAAGTGCTTCTGGTCATGCAAATGGGACACTTCAGCTGATGTATGCAGAATTACAAATGCTTTCTCCTTTGGTCTCCACACGCGAGACTCATTTCCTTCGGTATTGTCAACAAAACGCTGAGGAGGGAACCTGGGCCATTGTTGATTTCCCAATTGATAGCTTTCAACAAAATTTCCACACTTCTTATCCCAGATACTGCAGGAGGTGTTCTGGCTGTGTGATTCAAGATATGCCAAATGGGTATTCAAGGGTAACATGGGTTGAGCATGCAAAAGTAGAAGAGAAGCCTATTCATCAGATATTCTGCAACTATGTGTATAGTGGAATGGCATTTGGAGCACAGCGCTGGTTAGGAGTTTTGCAGAGGCAATGTGAAAGGGTTGCAAGCCTCATGGCCAGAAACATATCAGATCTTGGAGTGATACCTTCCCCAGAAGCAAGAAAGAACTTGATGAAACTAGCTCAGAGAATGATAAAAACCTTCAGCCATAACATGAGCACCTCTGGTGGTCAATCATGGACTGCCATATCAGATTCCCCTGAAGACACAGTTAGAATCACAACTAGGAAAGTCACAGAGCCTGGCCAACCCAATGGGGTGATTCTCAGTGCTGTTTCAACCACCTGGCTTCCCTATTCTCACACTAAGGTCTTTGATCTTCTAAGGGATGAACGCCACAGATCACAGATGGATGCTCTTTCGAACGGGAACTCGTTGAACGAAGTGGCTCACATTGCAAACGGCTCGCATCCTGGAAACTGCATTTCCCTTCTCCGCATAAATGTGGCGAGCAACTCATCCCAGAACGTGGAACTGATGCTACAAGAGAGTTGCACAGACCAATCAGGAAGCCTAGTAGTCTACACCACCATCGACGTTGAATCTATTCAGCTAGCCATGAGCGGCGAGGACCCTTCCTGCATTGCCCTTCTTCCTCAAGGGTTCATGATAGTGCCAATGGTACCATCCAATTCCACCGATGCCAATTCACCCGAAGCTGGTGCTGGTAACACTTCAGGTTGTCTTCTGACAATGGGGCTGCAAGTTCTGGCAAGCACAATCCCCACTGCGAAGCTGAACCTTTCAAGCGTGACGGCGATCAACAACCACCTCTGCAACACTCTGCACCAGATTGAAGCTTCTCTTTGCAGTGCTAACGGTTTCCTTGTTGCTGAACCCACTACCAGTGCACCCATCACAAAGCAGTGA 2331 0.4676 MYGDCQVMSDTLFSSPIQNPNFNFISTMPFHPFPPMKEEDSMLGGKEEMESGSESEQVEDKSGNEQEITEQPKKKRYHRHTARQIQEMEALFKECPHPDDKQRMKLSHDLGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENDSLKNENYRLQAALRSIICPNCGGPCMMGAEMGLDEQQLRLENARLREELERVCCITSRYTGRHIQTMAASPALMAPSLDLDMNIYSRHFGETLPPCTEMIPVPMLPPEASPFHQEDGLLMEDEKPLAMELAASSMAELVKMCRTNEPLWIRSSTDSEREVLNFEEHARMFPCPLSLKHQSEMRTEATRDTSVVIMNSVTLVDAFLDAQKWMELFPSIVSSAKTVQIISSSASGHANGTLQLMYAELQMLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPIDSFQQNFHTSYPRYCRRCSGCVIQDMPNGYSRVTWVEHAKVEEKPIHQIFCNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLAQRMIKTFSHNMSTSGGQSWTAISDSPEDTVRITTRKVTEPGQPNGVILSAVSTTWLPYSHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLVVYTTIDVESIQLAMSGEDPSCIALLPQGFMIVPMVPSNSTDANSPEAGAGNTSGCLLTMGLQVLASTIPTAKLNLSSVTAINNHLCNTLHQIEASLCSANGFLVAEPTTSAPITKQ* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0810 776 CDD START_ArGLABRA2_like 269 499 - -
Lja2g0810 776 ProSiteProfiles START domain profile. 265 503 IPR002913 GO:0008289
Lja2g0810 776 MobiDBLite consensus disorder prediction 40 74 - -
Lja2g0810 776 CDD homeodomain 74 132 IPR001356 GO:0003677
Lja2g0810 776 Gene3D - 59 141 - -
Lja2g0810 776 MobiDBLite consensus disorder prediction 33 80 - -
Lja2g0810 776 Pfam Homeodomain 74 129 IPR001356 GO:0003677
Lja2g0810 776 PANTHER - 65 762 - -
Lja2g0810 776 SUPERFAMILY Homeodomain-like 68 132 IPR009057 -
Lja2g0810 776 Gene3D - 274 484 IPR023393 -
Lja2g0810 776 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 65 762 IPR042160 -
Lja2g0810 776 SUPERFAMILY Bet v1-like 518 753 - -
Lja2g0810 776 Pfam START domain 275 500 IPR002913 GO:0008289
Lja2g0810 776 SUPERFAMILY Bet v1-like 267 502 - -
Lja2g0810 776 ProSitePatterns 'Homeobox' domain signature. 106 129 IPR017970 GO:0000981|GO:0006355
Lja2g0810 776 ProSiteProfiles 'Homeobox' domain profile. 71 131 IPR001356 GO:0003677
Lja2g0810 776 SMART START_1 274 500 IPR002913 GO:0008289
Lja2g0810 776 SMART HOX_1 72 135 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0810 Lja-Chr2 7431629 7437183 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0810 17 776 Homeobox Transcription Factor Family AT5G46880 57.934 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja2g0810 START 5.6e-38 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0810 - - gmx:100812829 1302.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0810 2 7431629 7437183 Lja2g0810 2 7431629 7437183 ECH
Lja2g0810 2 7431629 7437183 Lja2g2573 2 34701383 34707468 ECH