Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0809 ATGTTGCAGCAACAGGCTCAGGGGAAACTCCGGTGGGGTGAATTGGACGACGACGACGGCGGCGAGGATCTCGACTTCCTGTTACCGCCGCTTCAGGTCACACTTCCCGACGAGAACGGCATCAAGAAGGCTATTGAGTACAAGTTCAACGACGACGGCAACAAGGTCAAAATCACAACCACCACCCGCACACGCAAGCTCGCCGATGCTCATCTCAGCAAACGCGCCGTCGAGCGCCGGTCATGGCTCAAATTCGGCGACGCCGTTCAGGAAGATGTCGGCGCCCGCCTCACCATGGTCTCCACTGAAGAGATCCTCCTCGAACGCCCTAAGCCTCTTGGCGGCGCTGTTCTCATGGTCTGCAGGACGTGTCGGAAGGAAGGTGAGCATTGGACTGCCCGGTGTCCCCTCAAGGACCTTGCTGCGCAATCTGATGACACTGCCGATAAGCTTCCGGCGGCGTCGGCGTCGGCCGGAGGAGCAGCGTCGACGTACGTGCCTCCTGGGATGAGACCGGGTGCGGAGAGGAGCACTGGCTCCGACATGCGGCGCAGGAACGATGAGAATTCCGTGAGAGTGACCAACCTCTCGGAGGAGACGAGGGAGTTTGATTTGATGGAGCTTTTCCGTCCCTTTGGTGCTGTGAGTAGAGTCTATGTTGCCATTGATCAGAAGACAGGTGAGAGCAGGGGTTTTGGGTTTGTGAATTTTGTTAGCAGGGAAGATGCACAGAGAGCAATCAACAAACTCAATGGATATGGCTATGATAATCTAATCCTTAGAGTTGAATGGGCAACCCCTAGGGCTACCTAA 813 0.5633 MLQQQAQGKLRWGELDDDDGGEDLDFLLPPLQVTLPDENGIKKAIEYKFNDDGNKVKITTTTRTRKLADAHLSKRAVERRSWLKFGDAVQEDVGARLTMVSTEEILLERPKPLGGAVLMVCRTCRKEGEHWTARCPLKDLAAQSDDTADKLPAASASAGGAASTYVPPGMRPGAERSTGSDMRRRNDENSVRVTNLSEETREFDLMELFRPFGAVSRVYVAIDQKTGESRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRAT* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0809 270 CDD RRM_eIF3G_like 190 265 IPR034240 -
Lja2g0809 270 SMART rrm1_1 190 263 IPR000504 GO:0003723
Lja2g0809 270 MobiDBLite consensus disorder prediction 177 191 - -
Lja2g0809 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 267 IPR000504 GO:0003723
Lja2g0809 270 MobiDBLite consensus disorder prediction 151 191 - -
Lja2g0809 270 Gene3D - 141 270 IPR012677 -
Lja2g0809 270 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 112 - -
Lja2g0809 270 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 114 269 - -
Lja2g0809 270 PIRSF Transl_init_eIF-3_RNA-bind 1 116 IPR017334 GO:0003743|GO:0005737|GO:0005852
Lja2g0809 270 PIRSF Transl_init_eIF-3_RNA-bind 110 270 IPR017334 GO:0003743|GO:0005737|GO:0005852
Lja2g0809 270 SUPERFAMILY RNA-binding domain, RBD 172 268 IPR035979 GO:0003676
Lja2g0809 270 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 112 - -
Lja2g0809 270 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 114 269 - -
Lja2g0809 270 Pfam Eukaryotic translation initiation factor 3 subunit G 33 140 IPR024675 -
Lja2g0809 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 257 IPR000504 GO:0003723
Lja2g0809 270 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 269 IPR017334 GO:0003743|GO:0005737|GO:0005852
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0809 Lja-Chr2 7418462 7419424 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0809 4 270 Eukaryotic Initiation Factors Gene Family AT3G11400 63.009 9.45e-135 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0809 K03248 - gmx:100818725 408.683