Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0798 ATGTGGGATACCATTGCTGGTGGAGATTCTGAGGATGATCAAGAGGGTGTCAGAAATTTGGATGATGACAACTTCATAGATGACACTGGAGTGGAACCTGGTTTCTATGGTAACTACAATGAACCAAGCTCTCCTGGTGAAGCGCCTCAGGCAGAGGAAGGCGAAGAAGATGATGAAATCAATGATCTTTTTAAGATGGGTAAGAAAAAGAACGAAAGAAGTCCTGCAGAAATAGCTTTATTAGTTGAGAATGTCGTGGCTGAGCTTGAGGTTACAGCTGAAGAGGATGCTGAACTCAATAGACAGGGGAAGCCTGCTATTAATAAACTCAAGAAGTTGCCTCTTCTTACAGAAGTCCTCTCAAAGAAACAGCTCCAGCTAGAATTTTTAGATCATGGAGTCCTAACTTTATTGAAGAATTGGCTTGAGCCGCTTCCTGATGGAAGCTTGCCAAATATAAACATACGCACTGCAATTTTGAAGATTTTGAATGATTTTCCTATAGACCTAGAGCAGATTGACAGAAGAGAACAGCTGAAGAGGAGTGGTCTTGGGAAGGTAATTATGTTTTTATCAAAGTCTGATGAAGAAATAAATGTAAATAGGAAACTAACCAAGGAACTGGTTGATAAATGGAGCCGACCTATATTTAATAAGAGTACACGGTTTGAAGACATGCGAAATATTGAGGATGAGAGGGCTCCTTTCAGGAGGCCATCAGTAAAAAAGCCGGCAAATAAAGCTCCAGGAATGCAATCTAGAGACAGTGACCTTGATTTGGATCTTCCACAGCCTAGATCTGGTCAGTCCTCTTCCAGGCAACATGCATCAAGACCAGAAGCAACACCTATGGATTTTGTGATCCGTCCCCAATCTAAAGTTGATCCAGAAGAAGTTAGAGCACGGGCAAAGCAAGCTTCACATGATCAACAGCGTATGAAGATGAATAAGAAATTGCAGCAGTTGAGGGCACCAAAAAAGAGACAGCTTCAGGCTACAAAACTGAGTGTGGAAGGTCGTGGTATGATCAAATATTTGTAG 1041 0.4169 MWDTIAGGDSEDDQEGVRNLDDDNFIDDTGVEPGFYGNYNEPSSPGEAPQAEEGEEDDEINDLFKMGKKKNERSPAEIALLVENVVAELEVTAEEDAELNRQGKPAINKLKKLPLLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTAILKILNDFPIDLEQIDRREQLKRSGLGKVIMFLSKSDEEINVNRKLTKELVDKWSRPIFNKSTRFEDMRNIEDERAPFRRPSVKKPANKAPGMQSRDSDLDLDLPQPRSGQSSSRQHASRPEATPMDFVIRPQSKVDPEEVRARAKQASHDQQRMKMNKKLQQLRAPKKRQLQATKLSVEGRGMIKYL* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0798 346 MobiDBLite consensus disorder prediction 228 315 - -
Lja2g0798 346 MobiDBLite consensus disorder prediction 263 278 - -
Lja2g0798 346 ProSiteProfiles TFIIS N-terminal domain profile. 136 219 IPR017923 -
Lja2g0798 346 MobiDBLite consensus disorder prediction 11 25 - -
Lja2g0798 346 PANTHER PROTEIN IWS1 HOMOLOG 1 1 346 - -
Lja2g0798 346 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 75 222 IPR035441 -
Lja2g0798 346 PANTHER PROTEIN IWS1 HOMOLOG 1 1 346 IPR044204 GO:0009742|GO:0032784
Lja2g0798 346 Pfam TFIIS helical bundle-like domain 161 216 IPR017923 -
Lja2g0798 346 MobiDBLite consensus disorder prediction 291 315 - -
Lja2g0798 346 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0798 Lja-Chr2 7305361 7308795 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lja2g0798 Med26 1.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0798 K17498 - gmx:100801805 577.785