Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0796 ATGGGTTACCAAGACGATCCGAATCGCGACGAGGACGGAGAACCATTGATGGACTACGACGACGTTCAATCCGATCGGGAGCCATCTCCGGAGCCGAACAACAACCTCAACGATTTCGAGGAAGATGTCGACGATTGGGGCAACCGTGAACGATCTCAGACTCCGGTGTACGACAACGACTCGTCGAAGTCGAAGCCCAGGAAGAGGCTCATCAAGAAGGGCGGCGGTGGTGGGAGTCAGTCGGTGGCTCCGGATCTCGAGGATGAGGTGGAGGAGGAGGATTTTCCGGTGAGGTCTGATGAGGGGGAAGGGAGGAAGAGGAAGAAGGAGAAGGATGGTGGATCAGGGAAGAAGGAGAAGCGGCTTAAAGGCGATACGAGGTTCGGAAGTAGCAGCAGCGGCGGAAAGGGAGGTTCCAAATTTGGGTCTGCTAAGAAAGGGTTTGGGGGGAAGGCAGGGAAGGATCATGATGGTGAAGTTAAGGAGATGTGGGATACCATTGCTGGTGGAGATTCTGAGGATGATCAAGAGGGTGTCAGAAATTTGGATGATGACAACTTCATAGATGACACTGGAGTGGAACCTGGTTTCTATGGTAACTACAATGAACCAAGCTCTCCTGGTGAAGCGCCTCAGGCAGAGGAAGGTGAAGAAGATGATGAAATCAATGATCTTTTTAAGATGGGTAAGAAAAAGAAGAAGAACGAAAGAAGTCCTGCAGAGATAGCTTTATTAGTTGAGAATGTCATGGCTGAGCTTGAGGTTACAGCTGAAGAGGATGCTGAACTCAATAGACAGGGGAAGCCTGCTATTAATAAACTCAAGAAGCTGCCTCTTCTTACAGAAGTCCTCTCAAAGAAACAGCTCCAGCTAGAATTTTTAGATCATGGAGTCCTAACTTTATTGAAGAATTGGCTTGAGCCGCTTCCTGATGGAAGCTTGCCAAATATAAACATACGCACTGCAATTTTGAAGATTTTGAATGATTTTCCTATAGACCTAGAGCAGATTGACAGAAGAGAACAGCTGAAGAGGAGTGGTCTTGGGAAGGTAATTATGTTTTTATCAAAGTCTGATGAAGAGATAAATGTAAATAGGAAACTAGCCAAGGAACTGGTTGATAAATGGAGCCGACCTATATTTAATAAGAGTACACGGTTTGAAGACATGCGAAATATTGAGGATGAGAGGGCTCCTTTCAGGAGGCCATCAGTCAAAAAGCCGGCAAATAAAGCTGCAGGAATGCAATCTAGAGACAGTGACCTTGATTTGGATCTTCCACAGCCTAGGTCTGGTCAGTCCTCTTCCAGGCAACATGCATCAAGACCAGAAGCAACACCTATGGATTTTGTGATCCGTCCCCAATCTAAAGTTGATCCAGAAGAAGTTAGAGCACGGGCAAAGCAAGCTTCACATGATCAACAGCGTATGAAGATGAATAAGAAATTGCAGCAGTTGAGGGCACCAAAAAAGAGACAGCTTCAGGCTACAAAACTGAGTGTGGAAGGTCGTGGTATGATCAAATATCTGTAG 1533 0.4638 MGYQDDPNRDEDGEPLMDYDDVQSDREPSPEPNNNLNDFEEDVDDWGNRERSQTPVYDNDSSKSKPRKRLIKKGGGGGSQSVAPDLEDEVEEEDFPVRSDEGEGRKRKKEKDGGSGKKEKRLKGDTRFGSSSSGGKGGSKFGSAKKGFGGKAGKDHDGEVKEMWDTIAGGDSEDDQEGVRNLDDDNFIDDTGVEPGFYGNYNEPSSPGEAPQAEEGEEDDEINDLFKMGKKKKKNERSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLPLLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTAILKILNDFPIDLEQIDRREQLKRSGLGKVIMFLSKSDEEINVNRKLAKELVDKWSRPIFNKSTRFEDMRNIEDERAPFRRPSVKKPANKAAGMQSRDSDLDLDLPQPRSGQSSSRQHASRPEATPMDFVIRPQSKVDPEEVRARAKQASHDQQRMKMNKKLQQLRAPKKRQLQATKLSVEGRGMIKYL* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0796 510 Coils Coil 246 266 - -
Lja2g0796 510 PANTHER PROTEIN IWS1 HOMOLOG 1 1 510 - -
Lja2g0796 510 Pfam TFIIS helical bundle-like domain 325 380 IPR017923 -
Lja2g0796 510 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 239 386 IPR035441 -
Lja2g0796 510 MobiDBLite consensus disorder prediction 427 442 - -
Lja2g0796 510 PANTHER PROTEIN IWS1 HOMOLOG 1 1 510 IPR044204 GO:0009742|GO:0032784
Lja2g0796 510 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 295 383 IPR035441 -
Lja2g0796 510 MobiDBLite consensus disorder prediction 98 126 - -
Lja2g0796 510 MobiDBLite consensus disorder prediction 455 480 - -
Lja2g0796 510 MobiDBLite consensus disorder prediction 1 219 - -
Lja2g0796 510 MobiDBLite consensus disorder prediction 149 187 - -
Lja2g0796 510 MobiDBLite consensus disorder prediction 394 493 - -
Lja2g0796 510 ProSiteProfiles TFIIS N-terminal domain profile. 300 383 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0796 Lja-Chr2 7276127 7279639 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lja2g0796 Med26 7.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0796 K17498 - gmx:100801805 770.77