LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g0779	ATGGGTCGCAAACACGACGCCGTTGCGGCCAGCGAACCAGTCGCCGATGAAGCTCCCAACAGCCCCGAACTCCAATCCGAGAAGAAGAAGAAAAAGAAGAACAAAGACAAGCATCAAAACGGAGAGAAAACCAGTCCCAAAAGGAAGCTCGAGGAACTCGACAATCAAAACGGCACCGAATCGGAGAAGAAGAAAAAGAAGAAGAAGGAGAAGCACGACAACAAGTCAGAAGAGAACGCAGAAGAAACCAAAGAAGCAAACGGTAACGGTAACGCCGATGAAACGGTTGCGGACGGGGCCGTGGTGGTTACAGGGAAGGATGCTGCCGACGCGAAGTACGCGGCGGTGAAAACCTTCAAGGATTCGGGGCTGCCGGAGAATGTGATGGAGTGCTGCAAGGGGTTTGAGAAGCCTTCTCCGATTCAATCACGAGCGTGGCCTTTTTTGTTAGACGGTCGCGATCTGATTGGAATTGCAGCCACTGGCTCAGGGAAGACCTTGGCGTTTGGAATACCGGGGATTATGCATGTTCTGGGCAAGCGGAAGAATAAAGCTTCCAGGGGTCGGAGTCCTCTTTGCCTTGTTCTCTCTCCCACAAGGGAGCTAGCTCAGCAAATATCAGATGTAATGTGTGATGCTGGTAGAACTTGTGGTGTGGATTCTATATGTTTGTATGGTGGAACATCCAAAGGACCACAAATCTCTGCACTAAAATCTGGTGTTGACATTGTCATTGGAACTCCTGGCCGAATCCAGGATTTGATTGAAATGGGTATCTTGAGCCTGAAAGAAGTATCTTATGTGGTCCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAATAGTTCGCTCTATACTTGGGCAGACATGTTCTGTTCGTCAAATGATTATGTTCAGTGCTACATGGCCTTTAGCAGTTCATCACTTAGCACAGGAGTTTATGGATCCTAACCCTATAAAAGTTGTCGTAGGTTCCGAAGATTTAGCTGCCAATCATGATGTCATGCAGATAGTCGAGGTTTTGGATGACCGCGCACGTGACAAGCGTCTGTTTACTTTACTTGAAAAATACCACAAATCTCAGAGAAATCGAGTATTGGTTTTTGCTTTATACAAAAAGGAAACCGCACGAGTTGAAAGTATGCTTCAACAAGGGGGCTGGAAGGCTGTGTCGATACATGGGGACAAATCACAACATGAACGCACAAAGGCACTGTCTTTATTCAAGAACGGAAGCTGCCCTTTGATGATTGCGACTGATGTGGCTGCACGGGGATTGGATATTCCAGATGTTGAAGTAGTGATCAACTATAGTTTTCCACTAACTACAGAGGATTATGTTCATAGAATTGGGCGCACTGGGCGAGCTGGTAAAAAAGGTGTTGCCCATACATTCTTCACGCAGCAGAATAAGGGACTTGCTGGGGAGCTCGTGAATGTTTTAAGAGAAGCAAATCAAGTTGTGCCAGACGATCTCTTGAAATTTGGGACACATGTAAAGAAAAAGGAGTCCAAGCTTTATGGGGCTCACTTCAAGGAAATTCCTGTTGATGCTATGAAGTCTCAAAAAATAAAGTTTGCCGACTCAGACGATGAAGACTAA	1611	0.4618	MGRKHDAVAASEPVADEAPNSPELQSEKKKKKKNKDKHQNGEKTSPKRKLEELDNQNGTESEKKKKKKKEKHDNKSEENAEETKEANGNGNADETVADGAVVVTGKDAADAKYAAVKTFKDSGLPENVMECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPGIMHVLGKRKNKASRGRSPLCLVLSPTRELAQQISDVMCDAGRTCGVDSICLYGGTSKGPQISALKSGVDIVIGTPGRIQDLIEMGILSLKEVSYVVLDEADRMLDMGFEQIVRSILGQTCSVRQMIMFSATWPLAVHHLAQEFMDPNPIKVVVGSEDLAANHDVMQIVEVLDDRARDKRLFTLLEKYHKSQRNRVLVFALYKKETARVESMLQQGGWKAVSIHGDKSQHERTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREANQVVPDDLLKFGTHVKKKESKLYGAHFKEIPVDAMKSQKIKFADSDDED*	537

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja2g0779	536	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	336	499	IPR001650	-
	Lja2g0779	536	SMART	ultradead3	134	340	IPR014001	-
	Lja2g0779	536	MobiDBLite	consensus disorder prediction	38	88	-	-
	Lja2g0779	536	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	11	522	-	-
	Lja2g0779	536	CDD	DEADc	133	324	-	-
	Lja2g0779	536	Gene3D	-	53	325	IPR027417	-
	Lja2g0779	536	CDD	SF2_C_DEAD	337	469	-	-
	Lja2g0779	536	MobiDBLite	consensus disorder prediction	1	95	-	-
	Lja2g0779	536	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	117	143	IPR014014	GO:0003724
	Lja2g0779	536	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	269	277	IPR000629	-
	Lja2g0779	536	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	146	323	IPR014001	-
	Lja2g0779	536	Gene3D	-	326	502	IPR027417	-
	Lja2g0779	536	Pfam	DEAD/DEAH box helicase	140	308	IPR011545	GO:0003676\|GO:0005524
	Lja2g0779	536	Pfam	Helicase conserved C-terminal domain	354	460	IPR001650	-
	Lja2g0779	536	PANTHER	BNAA08G07020D PROTEIN	11	522	-	-
	Lja2g0779	536	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	190	473	IPR027417	-
	Lja2g0779	536	SMART	helicmild6	379	460	IPR001650	-
	Lja2g0779	536	Coils	Coil	50	85	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g0779	Lja-Chr2	7093715	7098899	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g0779	116	489	Eukaryotic Initiation Factors Gene Family	AT3G19760	32.447	2.10e-56	192

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g0779	K14811		-	gmx:100305353	862.833