Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0775 ATGGCAGCTTTTACTGTCTACTCTACACAATCTCTGAGATCAAATTGCTCCATCGCCACCCCATCAAAATCCCATGTGGGATTTCACCAAAAACAACAGTTAGTTTTCTACAAGAGAGGTAGTGACAGTACTAGCACCAGCAGAAGGTATGTGATAACATGTGCAGGTGGTGACCAACAGACAATTGTGATTGGTCTAGCTGCTGACTCAGGATGTGGGAAGAGCACCTTCATGAGGAGGCTCACAAGTGTGTTTGGAGGAGCAGCAGAGCCACCAAAGGGTGGGAACCCAGATTCCAACACTCTCATCAGTGACACCACCACTGTGATATGTTTGGATGATTACCATTCACTTGATAGAACTGGTAGAAAGGAAAAGGGTGTCACTGCACTTGACCCAAAAGCTAATGATTTTGATCTCATGTATGAGCAAGTTAAGGCAATTAAGGAAGGAATTTCTGTTCAAAAGCCTATTTATAATCATGTTACTGGTCTTTTGGATCCACCAGAGCTTATTAAACCTCCCAAAATCTTGGTCATTGAAGGTCTTCACCCAATGTATGACCCTCGGGTCAGAGAACTGTTGGACTTTAGCATCTACTTAGACATTAGCAATGAGGTGAAATTCGCTTGGAAAATTCAGAGAGACATGGCAGAGCGTGGACATAGTCTTGAAAGTATCAAGGCTAGCATTGAAGCAAGAAAGCCTGATTTTGATGCTTATATTGATCCACAAAAGCAATATGCAGATGCAGTGATAGAAGTGTTGCCAACCCAACTGATTCCTGATGATAATGAAGGGAAGATTTTAAGAGTGAGGTTAATACAGAAAGAGGGGGTGAAGTACTTTAGCCCTGTTTACTTGTTTGATGATGGCTCCACCATTTCTTGGATACCATGTGGAAGGAAGCTTACATGCTCTTACCCTGGCATCAAGTTCTTCTATGGACCAGACACTTACTATGGAAGTGAGGTGTCAGTTGTGGAAATGGATGGACAATTTGACAGATTAGATGAACTAATATATGTTGAGAGCCACCTAAGCAACCTCTCTTCCAAGTTCTATGGAGAGGTTACTCAACAAATGTTGAAGCATGCTGATTTCCCTGGTAGCAACAATGGGACAGGTCTCTTCCAAACCATAGTTGGTTTGAAGATAAGAGATCTTTATGAGCAGATACTAGCCAGCAGGGCTGAGACTCCAGTAGGAGCAGCAAAAGCTTAG 1224 0.4273 MAAFTVYSTQSLRSNCSIATPSKSHVGFHQKQQLVFYKRGSDSTSTSRRYVITCAGGDQQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPKANDFDLMYEQVKAIKEGISVQKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDPRVRELLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKILRVRLIQKEGVKYFSPVYLFDDGSTISWIPCGRKLTCSYPGIKFFYGPDTYYGSEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQILASRAETPVGAAKA* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0775 407 ProSitePatterns Phosphoribulokinase signature. 212 225 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lja2g0775 407 CDD PRK 63 351 - -
Lja2g0775 407 Gene3D - 58 293 IPR027417 -
Lja2g0775 407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 332 IPR027417 -
Lja2g0775 407 PANTHER PHOSPHORIBULOKINASE 6 407 - -
Lja2g0775 407 PANTHER URIDINE KINASE 6 407 - -
Lja2g0775 407 Pfam Phosphoribulokinase / Uridine kinase family 63 261 IPR006083 GO:0005524|GO:0016301
Lja2g0775 407 PRINTS Phosphoribulokinase family signature 68 85 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lja2g0775 407 PRINTS Phosphoribulokinase family signature 177 195 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lja2g0775 407 PRINTS Phosphoribulokinase family signature 212 229 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lja2g0775 407 PRINTS Phosphoribulokinase family signature 230 253 IPR006082 GO:0005524|GO:0005975|GO:0008974
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0775 115 289 PRT Gene Family AT3G27440 26.404 1.12e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0775 K00855 - gmx:100807126 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0775 2 7054061 7056732 Lja2g0775 2 7054061 7056732 ECH