LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g0757	ATGGAAATCCAAAGCAGCTCTTCAACTCCGATGATATGGAAATATGATGTGTTTGTGAGCTTTAGAGGTGAAGACACAAGAAACAACTTCACTGATCATCTTTTTGGTGCTCTCTATGGAAAAGGCTTTGTTACTTTCAAAGATGACACCATGCTAAGAAAAGGTAAAAATATATCCACTGAGCTTATACAAGCAATTGAAGGATCACAAATTCTGATTGTGGTCTTCTCAAAATACTATGCTTCTTCCACATGGTGCTTGCAAGAACTGGCAAAAATTGCTGATTGCATTGTAGGAAAGAGGCAGACTGTTCTGCCTGTTTTCTGTGATGTGACTCCATCTGAGGTGCGGAAACAAAGCGGAAATTATGGAGAAGCTTTTCTGAAGCATGAAGAAAGATTCAAAGAAGATTTACAAATGGTTCAAAGATGGAGGAAAGCTCTAGCACAAGTGGCCGATCTCTCTGGATGGGATGTAACAAATAAGCCACAACATGAGCAGATTGGAGAAGTAATTAAACAAGTAACATGCACATTGAGTTACAAGTTTTCAACTATACCGGATGATGTAGTTGGGATACAGTCACCGTTGAAAGAATTAGAAAAACTTCTAGTTTTGGACTCGAATGATGATGTTCGAGTTATGGGGATATGTGGAATGGGTGGACTAGGAAAGTCGACTCTTGCTACTTTTTTGTATCAGAGAATCTCTAACCAATTTGATGCGACCTGTTTTATTGATGATATAAGTAAACTTCTTAGGGAGCAGAGTGCAATGGAGGCTCAAAAACAAATTCTTAGTCAAACTCTAAATGAGGAAAATCTTCAGTTGTATAATCTTCCAATGACAACTAATTTGATGCAAACTAGACTATGCCACAAAAAGGCCCTCATAGTTCTTGATAATGTCGATGAAGTGAAACAGCTGTACAAATTGGCTTTGAAACATGGATCTCTAGGTGCTGGAAGTAGAATCATCATAATTTCTAGGGATGAACATATCTTGAAAGAGTATCCAGTGGATGAAGTTTACAAAGTTCAACTCTTGAAAAGTCAAGATGCTCTTCAATTGTTTTGCATAAAAGCTTTCAAATGTGATGATGTAATGAGTGATGAATACATTGACTTGACGAATGAAGTCTTGGAATATGCTGGCCGCTTGCCATTAGCAATAAACGTATTGGGTTCATTTTTGTTTGGTCGAGATGTTTCTGAATGGAGAAGTGCATTGGCTAGACTGAGAGAATATCCAGAAAAAGATATAATGGATGTGCTTCGAGTAAGTTTTGATGCATTGAATGATGCAGAGAAGGAAATATTTTTAGATATTTCTTGTTTATTTGATGGAAGATTACCAAAGTATGAGAAGAAAATTCTGGATATTCGTGGATTTCATCCAGAAATTGGTATACCCGTTCTCATTGATAAATCGCTACTCGAAGTTACTGGATATGGGGAATTTAAAATGCATGACTTGTTGAAAGAGCTGGGCAAGAAAATTGTTCGAGAAAAATCACCAAAAGAGCCAAGAAAGTGGAGCAGGTTATGGGACTACAAGGATTTCCACAATGTTATGTTAGAAAATCAGGCAACAGAGACTCTTCAAGCAATAGTTATTAAACATTGGGATTCAGAGTTTTTAGAAACAACCATGAGGGCTGATGCTTTGTCGAAAATGAGCCACCTTAAGTTGTTGATTCTTGAAAATGTGAACTTTTCAGGAGGTCTCAATCATCTTTCAAATGAATTAGGATACCTTCATTGGGAAAAGTATCCTTTCAAGTGTTTGCCACCAAGTTTTCAACCAGATAAACTTGTTGAATTGATCATGCCTCATAGTAGCATCAAACAATTGTGGGAAGGCACAAAGCCTCTACACAGTTTAAAACGTATGAATCTCTCTCACTCCAGAAGTCTTATTAAGCTACCGGATTTTACGGAGGCCCCAAATCTTGAGTCCCTGAATCTTGAAGGATGCATAAAACTTGTGCGGATCAATGAGTCCATTGGCACTCTAAGGAAGCTTGTCGATTTGACCTTGAAGGGTTGTATAAATCTAGTCAGCATTCCCAGTAGCATTTTTCATCTCAGTTCTCTTAAAAGTTTAAATCTCTCTGGATGCTCAAAATTACGTAGCATTAATCTAGTCAGCATTCCCAGTAGCATTTTTCATCTCAGTTCTCTTGAAGGTCTAGATCTTTCTGGCTGCTCAATTTGA	2217	0.3762	MEIQSSSSTPMIWKYDVFVSFRGEDTRNNFTDHLFGALYGKGFVTFKDDTMLRKGKNISTELIQAIEGSQILIVVFSKYYASSTWCLQELAKIADCIVGKRQTVLPVFCDVTPSEVRKQSGNYGEAFLKHEERFKEDLQMVQRWRKALAQVADLSGWDVTNKPQHEQIGEVIKQVTCTLSYKFSTIPDDVVGIQSPLKELEKLLVLDSNDDVRVMGICGMGGLGKSTLATFLYQRISNQFDATCFIDDISKLLREQSAMEAQKQILSQTLNEENLQLYNLPMTTNLMQTRLCHKKALIVLDNVDEVKQLYKLALKHGSLGAGSRIIIISRDEHILKEYPVDEVYKVQLLKSQDALQLFCIKAFKCDDVMSDEYIDLTNEVLEYAGRLPLAINVLGSFLFGRDVSEWRSALARLREYPEKDIMDVLRVSFDALNDAEKEIFLDISCLFDGRLPKYEKKILDIRGFHPEIGIPVLIDKSLLEVTGYGEFKMHDLLKELGKKIVREKSPKEPRKWSRLWDYKDFHNVMLENQATETLQAIVIKHWDSEFLETTMRADALSKMSHLKLLILENVNFSGGLNHLSNELGYLHWEKYPFKCLPPSFQPDKLVELIMPHSSIKQLWEGTKPLHSLKRMNLSHSRSLIKLPDFTEAPNLESLNLEGCIKLVRINESIGTLRKLVDLTLKGCINLVSIPSSIFHLSSLKSLNLSGCSKLRSINLVSIPSSIFHLSSLEGLDLSGCSI*	739

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja2g0757	738	PRINTS	Disease resistance protein signature	694	710	-	-
	Lja2g0757	738	PRINTS	Disease resistance protein signature	214	229	-	-
	Lja2g0757	738	PRINTS	Disease resistance protein signature	384	398	-	-
	Lja2g0757	738	PRINTS	Disease resistance protein signature	290	304	-	-
	Lja2g0757	738	Pfam	NB-ARC domain	206	416	IPR002182	GO:0043531
	Lja2g0757	738	Gene3D	Ribonuclease Inhibitor	516	738	IPR032675	-
	Lja2g0757	738	Gene3D	-	348	433	IPR042197	-
	Lja2g0757	738	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	10	736	-	-
	Lja2g0757	738	SUPERFAMILY	Toll/Interleukin receptor TIR domain	5	157	IPR035897	-
	Lja2g0757	738	Pfam	TIR domain	14	175	IPR000157	GO:0007165
	Lja2g0757	738	Pfam	Leucine Rich Repeat	604	623	IPR011713	-
	Lja2g0757	738	Gene3D	-	11	176	IPR035897	-
	Lja2g0757	738	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	10	736	IPR044974	GO:0006952
	Lja2g0757	738	SUPERFAMILY	"Winged helix" DNA-binding domain	420	524	IPR036390	-
	Lja2g0757	738	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	182	443	IPR027417	-
	Lja2g0757	738	SUPERFAMILY	L domain-like	505	738	-	-
	Lja2g0757	738	ProSiteProfiles	TIR domain profile.	13	179	IPR000157	GO:0007165
	Lja2g0757	738	SMART	till_3	14	154	IPR000157	GO:0007165
	Lja2g0757	738	Gene3D	-	177	342	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g0757	Lja-Chr2	6900934	6906331	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g0757	15	733	WRKY Transcription Factor Family	AT4G12020	30.319	1.13e-85	295

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g0757	-		-	lja:Lj6g3v1601950.1	1025.39