Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0755 ATGCCAGTTTCTCTCTCCTCGATTCAACCCTCTTTCCTCAAACCCCAATCCCAAATGATGAGCGTTCCTCCGCCGCCGGTGATGTGGCCGCCGCCGTTCACGGTGTCGCAGTGGCAAGAGCTGGAGCACCAAGCCCTCATCTTCAAGTACCTCAAGGCGGGTCTCTCTGTCCCTCCCGACCTCCTCGTACCCATTCGGAAAAGTCTTCAGTTGATGTCTCATCCTCACTCTTCTCTTGGGTATTATGGGAAGAAGATTGACCCAGAACCAGGAAGGTGCAGGAGAACCGATGGCAAGAAATGGAGGTGTGCAAAGGATGCTCACCCTGACTCCAAATACTGTGACCGCCACATGATACGTCGCCGGTACCGTTCAAGAAAGCCTGTGGAATCTCAACCTCAACCTTCTTCTTCTTCTTCTTCTTCACAACTTGCTGCTTCCACTGCTGGGTCTGGAAGCACTGCAAAAACTGCATCTGCAGCTGTAACCACTTTCCAAAACAACCTCCCCTTGCACACCAATGGTGCCCGTGAAGGTTTCAGCTTCACCCTTGGGAACTCTACCTCCCAACTTCACATGGACACTTCCAAGAAACCTTACAGGTTTGAACTGACCAACGAAGCAGAGGAGCACAGCCTCTTACAGAAAGATCTGGGAAGTGTGAAGTATCAAGGTTATGACTTTACCTCAGATGGTATGTGGTCTCACATGCATCAGATTCCGTCAAACACTATTTCAGAATCAAGGAGTGGTTCTGCTATAGTTGGCAACTGCTTCCAACAGCGAACAACCCGAGATGCTGAACTGTTGAACCTTGACACTGCAAGGTCCAAGGAACTTGCATTTAGTGGCCAGGTATGTTCAGCAGGGCGCTTGAAACAGGAATATCAGTCCCCTCAGTCTCTCTTCAGTGACTGGCACTGGAAGAAGGATTTAGGTTCTTCTGCCACTGCGTATAGGCCCAACAAGGATTTCAACTGCAACCCAGATATCAATGCTGATTCAAGTGGTTCTTTATGA 1020 0.4961 MPVSLSSIQPSFLKPQSQMMSVPPPPVMWPPPFTVSQWQELEHQALIFKYLKAGLSVPPDLLVPIRKSLQLMSHPHSSLGYYGKKIDPEPGRCRRTDGKKWRCAKDAHPDSKYCDRHMIRRRYRSRKPVESQPQPSSSSSSSQLAASTAGSGSTAKTASAAVTTFQNNLPLHTNGAREGFSFTLGNSTSQLHMDTSKKPYRFELTNEAEEHSLLQKDLGSVKYQGYDFTSDGMWSHMHQIPSNTISESRSGSAIVGNCFQQRTTRDAELLNLDTARSKELAFSGQVCSAGRLKQEYQSPQSLFSDWHWKKDLGSSATAYRPNKDFNCNPDINADSSGSL* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0755 339 PANTHER GROWTH-REGULATING FACTOR 20 336 - -
Lja2g0755 339 MobiDBLite consensus disorder prediction 124 152 - -
Lja2g0755 339 Pfam WRC 88 130 IPR014977 -
Lja2g0755 339 MobiDBLite consensus disorder prediction 129 152 - -
Lja2g0755 339 MobiDBLite consensus disorder prediction 82 109 - -
Lja2g0755 339 Pfam QLQ 32 66 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lja2g0755 339 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 280 291 IPR016160 GO:0016491
Lja2g0755 339 SMART QLQ_2 31 67 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lja2g0755 339 ProSiteProfiles QLQ domain profile. 32 67 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lja2g0755 339 PANTHER - 20 336 IPR031137 GO:0005634|GO:0006351|GO:0032502
Lja2g0755 339 MobiDBLite consensus disorder prediction 87 109 - -
Lja2g0755 339 ProSiteProfiles WRC domain profile. 87 131 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0755 Lja-Chr2 6877838 6880652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0755 31 130 GRF Transcription Factor Family AT3G13960 59.091 5.94e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lja2g0755 WRC 6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0755 - - lja:Lj2g3v1537380.1 623.624