Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0744 ATGGCTGTGAATCTGACTGAAGGTGCGATAATGGCTATGTGCACTGACGGTGTCACTTCCGACCAATTGCAACCGGTGCTGCAAATTATCGACTTGAAGCACGTGCAGACGCAGCAGAACAACGCCACTAAGCGCTATCGCGTTGTCGTCTCCGACGGTTTTCTCTACCAGCAAGGGATGCTCGCCACTCAGAGGAACGAGTTGGTTGATTCTGGAAAGTTGCAAAAAGGCTCCATTGTTAGGCTCACTCAGTTCGCGTGTAACCATGTCGGGGATCGCATGATTATTATCATCATTGATCTAGAGATTATAATGGACAAATGTGACCTGATTGGAGAGCCTAAGCCAGCACCCAGAAATGGGGCGCGCGCACAATCTGCTACCGGTCAATCAGGAGTTACCTCTGGGAACTCGCAGCCTTTCAATAATAGTGCAAATGCAGGTGGCGTGACTGCTCGGACAAGTCCTGTTGGGCCTTCTCTGGATCATCCGAAAGTGAACCCTCCTGCTACTAATGTTTATTCTAGCAGTTCTGACCCTGCAAGATTTGGTGCATCTAATGCCACTGCTGCTGCTAGCAGTGTTTATTCTAGCAGTTCTGACTCTGCAAGATTTGGTGCATCTAATGCCACTGCTGCTGCTAGCAGTGTTTATTCTAGCAGTTCTGACTCTGCAAGATTTGGTGCATCTAATGCCCCTCCTGCTTATCCTAAAGTAGAGTCTGGAGCCAGTTTGCCGAGATCAACAACACACGGTGGATCTTACGGTGATCAGAACACAGGTTTTCGTAATCCCCAACAATATGAGGCTTCAAGGCCGGTGCCAAATTCTTATGCTCGTACACCTCAGCCTATGTACCGACAGCCATCTCCAATGTACACTAACAGAGGGCCTATAGGAAGAAATGAAGCTCCCCCCCGGATAATTCCGATAGCTGCATTGAATCCATACCAGAATATGTGGACAATTAAAGCCAGAGTAACCGCTAAGGGAGAACTGAGGGCCTATCATAATGCTCGAGGTGAGGGAAAAGTGTTTTCTTTTGATCTTCTGGATTCTGATGGGGGAGAAATTCGGGCAACTTGCTTTAATGCTGTGGCTGATCAGTTCTATAATGCAATTGAAGCTGGCAATGTCTATCTGATATCCAGGGGAAGTGTAAAGCCAGCTCAAAAGCAATTCAATCACCTTCGTAATGATCAAGAGCTAACCCTTGACATCACATCAGTTATACAGCCGTGCCTCGAGGATGATAACTTAATTCCAAAGCAGACATTTAATTTTCGTCCCATAAGCGATATCGAGAGTATGGAAAACAACAGCATTGTGGATGTGATTGCTGTGGTGACCTCTATTAGTCCTACAGGTTCGATCATGAGAAAAAATGGCACTGAAACACAGAAGAGAACTCTCAAGTTGAAAGACATGTCTGGCCGAAGTGCTGAATTGACCTTATGGGGTAATTTTTGCAACACTGAAGGACAAACACTGCAAAGTATTTGTGACTCTGGGGCTTTTCCAGTTTTGGCAGTAAAAGCTGCCAGAGTAAATGATTTCAACGGGAAGTCTGTCGGCACCATAGCCACTAGCCAGCTATTTGTAGAACCTGATTTTGCAGAGGCTTTTACACTGAGACAATGGTATGACAATGAAGGGAAGAATGTCCCAAGTCTCTCTATTTCCAGAGAAACTTCTAGTGCTGGTAAAACTGATGTGCGGAAGGTTATATCCCAGATTAAGGATGAGAAGTTAGGGACTTCAGAGAAACCTGATTGGATATCTGTCTGTGCAAGTGTTTCATTCATTAAAGTTGATAATTTCTGCTACACAGCTTGTCCTATCATGATTGGGGATAGACAATGTAACAAGAAGGTTACCAATAATGGAGATGGGAAATGGCACTGTGACAGGTGTGATAAGTCTACTGATGCTTGTGATTATAGGTACATTCTGCAATTACAGATACAGGATCACACTGGCGTAACATGGGTGACTGCTTTCCAGGAGGGTGGTGAGGAGATCTTGGGTATGCCTGCGAAAGATCTGTATCATCTGAAATTTGATGAACAAGATGATGAAGGATTTGCAGAAATCATCCGTAAGGTTCTCTTCACTAAATATGTATTCAAGTTAAAAGTAAAGGAGGAAACTTGGAGTGATGAACAACGTGTGAAGTCAACTGTTGTAAAAGCCGAGAAGGTAAACTTCGCATCTGAATCTAGATTTCTCTTGGAATTGATTGATAAATTTAAGTCTGAGAAAGCAGAAGGTGTGACTACTAACTCTGTCACCAATAATACTGGACTGTTGAGTGTTGAAACTGGACAAGCTATGGTACCAGTTTATACCCCTATGAGGAGCAACACTCCTGCTAGCAGAGATTATGGGATGCCAGGAAACCAAATGGGGCAGAGTGGAAACCAATATAACAGTTCCTTTGCTTCTCCAGGGGCTGCTACTGGCTCATACATGTCATGTAACAATTGTGGAGGCTCTGGTCATAGCTCTGCTCAATGTGTGAATCTCAGAAGTCAACCTGGACAGGCTGTGGGAGGAGGAACCTTCGCAAATAGCAGGGTATCTGCTGGATCAAGTGTCGCCTCTGGTGAATGCTATAAATGCCATCAAACTGGTCACTGGGCAAGAGACTGTCCTGGTTTTAGTGCAGCACCGCCGGCTTATGGAAGCGGTAATGGGCAAGAGACTGCTGGATCAGGTGGTGGCTCTGGTGAATGTTTTAAGTGTCGTCAACCTGGCCACTGGGCAAGAGACTGTCCTGGTTTGAGTGCAGCACCGCCGGCTTATGGAAGTGGTAATGTAATGCAAGGAAGATATGGGGTTGCTCAAAAGCAACAATTTGGAGGGTATTGA 2871 0.4525 MAVNLTEGAIMAMCTDGVTSDQLQPVLQIIDLKHVQTQQNNATKRYRVVVSDGFLYQQGMLATQRNELVDSGKLQKGSIVRLTQFACNHVGDRMIIIIIDLEIIMDKCDLIGEPKPAPRNGARAQSATGQSGVTSGNSQPFNNSANAGGVTARTSPVGPSLDHPKVNPPATNVYSSSSDPARFGASNATAAASSVYSSSSDSARFGASNATAAASSVYSSSSDSARFGASNAPPAYPKVESGASLPRSTTHGGSYGDQNTGFRNPQQYEASRPVPNSYARTPQPMYRQPSPMYTNRGPIGRNEAPPRIIPIAALNPYQNMWTIKARVTAKGELRAYHNARGEGKVFSFDLLDSDGGEIRATCFNAVADQFYNAIEAGNVYLISRGSVKPAQKQFNHLRNDQELTLDITSVIQPCLEDDNLIPKQTFNFRPISDIESMENNSIVDVIAVVTSISPTGSIMRKNGTETQKRTLKLKDMSGRSAELTLWGNFCNTEGQTLQSICDSGAFPVLAVKAARVNDFNGKSVGTIATSQLFVEPDFAEAFTLRQWYDNEGKNVPSLSISRETSSAGKTDVRKVISQIKDEKLGTSEKPDWISVCASVSFIKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWHCDRCDKSTDACDYRYILQLQIQDHTGVTWVTAFQEGGEEILGMPAKDLYHLKFDEQDDEGFAEIIRKVLFTKYVFKLKVKEETWSDEQRVKSTVVKAEKVNFASESRFLLELIDKFKSEKAEGVTTNSVTNNTGLLSVETGQAMVPVYTPMRSNTPASRDYGMPGNQMGQSGNQYNSSFASPGAATGSYMSCNNCGGSGHSSAQCVNLRSQPGQAVGGGTFANSRVSAGSSVASGECYKCHQTGHWARDCPGFSAAPPAYGSGNGQETAGSGGGSGECFKCRQPGHWARDCPGLSAAPPAYGSGNVMQGRYGVAQKQQFGGY* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0744 956 SUPERFAMILY Nucleic acid-binding proteins 426 555 IPR012340 -
Lja2g0744 956 MobiDBLite consensus disorder prediction 243 290 - -
Lja2g0744 956 Pfam Replication protein A OB domain 431 534 IPR031657 -
Lja2g0744 956 SUPERFAMILY Nucleic acid-binding proteins 573 750 IPR012340 -
Lja2g0744 956 PANTHER REPLICATION PROTEIN A SUBUNIT 3 789 - -
Lja2g0744 956 CDD RPA1_DBD_B 442 549 - -
Lja2g0744 956 CDD RPA1N 8 93 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lja2g0744 956 SUPERFAMILY Retrovirus zinc finger-like domains 897 929 IPR036875 GO:0003676|GO:0008270
Lja2g0744 956 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 264 749 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja2g0744 956 CDD RPA1_DBD_A 310 413 - -
Lja2g0744 956 Pfam Zinc knuckle 911 926 IPR001878 GO:0003676|GO:0008270
Lja2g0744 956 Pfam Zinc knuckle 870 885 IPR001878 GO:0003676|GO:0008270
Lja2g0744 956 SUPERFAMILY Retrovirus zinc finger-like domains 860 888 IPR036875 GO:0003676|GO:0008270
Lja2g0744 956 SMART c2hcfinal6 911 927 IPR001878 GO:0003676|GO:0008270
Lja2g0744 956 SMART c2hcfinal6 825 841 IPR001878 GO:0003676|GO:0008270
Lja2g0744 956 SMART c2hcfinal6 870 886 IPR001878 GO:0003676|GO:0008270
Lja2g0744 956 ProSiteProfiles Zinc finger CCHC-type profile. 912 926 IPR001878 GO:0003676|GO:0008270
Lja2g0744 956 MobiDBLite consensus disorder prediction 123 153 - -
Lja2g0744 956 Gene3D - 307 416 IPR012340 -
Lja2g0744 956 Gene3D - 420 557 IPR012340 -
Lja2g0744 956 Pfam OB-fold nucleic acid binding domain 321 409 IPR004365 GO:0003676
Lja2g0744 956 ProSiteProfiles Zinc finger CCHC-type profile. 871 885 IPR001878 GO:0003676|GO:0008270
Lja2g0744 956 MobiDBLite consensus disorder prediction 221 291 - -
Lja2g0744 956 Gene3D - 799 892 - -
Lja2g0744 956 SUPERFAMILY Nucleic acid-binding proteins 1 112 IPR012340 -
Lja2g0744 956 Pfam Replication factor-A C terminal domain 592 743 IPR013955 -
Lja2g0744 956 Pfam Replication factor-A protein 1, N-terminal domain 5 105 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lja2g0744 956 PANTHER REPLICATION FACTOR A 1, RFA1 3 789 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja2g0744 956 MobiDBLite consensus disorder prediction 169 184 - -
Lja2g0744 956 SUPERFAMILY Nucleic acid-binding proteins 307 420 IPR012340 -
Lja2g0744 956 CDD RPA1_DBD_C 576 749 IPR013955 -
Lja2g0744 956 ProSiteProfiles Zinc finger CCHC-type profile. 826 839 IPR001878 GO:0003676|GO:0008270
Lja2g0744 956 Gene3D - 893 935 - -
Lja2g0744 956 Gene3D - 3 117 IPR012340 -
Lja2g0744 956 Gene3D - 558 751 IPR012340 -
Lja2g0744 956 MobiDBLite consensus disorder prediction 115 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0744 Lja-Chr2 6800124 6803687 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0744 1 852 Core DNA Replication Machinery Family AT5G45400 52.894 0.0 883
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0744 K07466 - gmx:100778597 1259.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0744 2 6800124 6803687 Lja2g0744 2 6800124 6803687 ECH