Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0739 ATGGAGTCGAGTGAGTACGAGAGCGTGTCGATTCGAGAGGTCCATGCAAATGGAAGCAGCATGGCTGCATCAGAAGTTGAGGCCAAGCTTGATGAAGGAAATATTCAAGAGGCGGAATCCGCATTGCGAGAGGGGTTATCACTCAATTTCGAGGAAGCAAGAGCTCTTCTTGGGAAGTTGGAGTATCAAAGAGGTAATGTAGAAGGCGCTCTTCGTGTGTTTGATGGGATTGATCTCCAAGCTGCCATACAGCGATTGCAGCCCTCCTTTTCTGAAAAATCACCGGTCAAGAAAGGTCGCACTCGCACTGAATCACCTTCTTCAGTCTCTCAGCATGCTGCCAGTTTGGTGCTTGAAGCCATCTACTTAAAAGCCAAGTCTCTACAAAAACTGGGGAAATTTTCTGAAGCAGCTAATGATTGTAAACGCATTCTTGACGCTGTTGAGAAGATTTTTTATCAGGGCATACCTGATATTCAAGTAGATAATAAACTGCAAGAGATAGTGAGCCACGCAGTAGAGCTCCTTCCAGAGCTTTTGAAACTAGCTGGTTGCTATGATGAGGCAATCTCGGCTTATAGGCGCGCTCTTCTTAGCCAGTGGAACCTTGATAATGATTGCTGTGCAAGGATTCAGAAATCGTTTGTTGTTTTTCTGCTGTACAGTGGGGTGGAGGCAAGTCCACCTAGCTTAGCTGTTCAAGTTGAGGGGTCATATGTGCCTAAAAATAATCTCGAAGAGGCAATTCTGCTTTTAATGATTCTTATTAGAAAGTTTTGCCTTGGTAAGACGAAATGGGACCCTTCAGTCATGGAACACCTGACTTTTGCACTTTCTGTATGTAACCAAACTTCTATTTTGGCAAAGAACTTTGAAGAATTGATGCCCGGGGTATACCATCGTATCGATCGTTGGAATTCTTTAGCTTTATGTCATAGTGGAGCAGGACAAAACGACAGTGCTTTGAATCTGCTTAGGAAGTCTTTGCACAAGCATGAACGACCAAATGACCTTACATCATTATTGTTAGCTGCTAGGATCTGCAGTGAGCATCCCCATCTTGCTGCTGAGGGAGTGGACCATGCCCAGAGGGCAATAAGTAACGCTCAAGGCCTGAACGAGCATTTAAAAGGCGTCGGTCTACGGATGTTAGGTCTTTGTTTGGGAAAGCAAGCTATGGTTGCTTCTTCTGACTTTGAGAGGTCTTGCCTTCAGTCAAAAGCACTGGAGTCATTGGAGGAGGCAATTAGATTGGAGCGAAACAATTCTGATTTGATTTTTGAGTTGGCTGTTCAATATGCAAAGCACCGAAATTTGACTGCTGCTTTGCGCTCTGCGAGGCATTTCTTTAATGAAACTGGTGGCTCTATATTGAAAGCTTGGATATTGCTTGTTCTGATTTTGTCTGCACAACAAAAATTTATGGAAGCTGAAGTGGTGACAGATGCTGCTTTAGATCAGACTGCTAGATGGGAGCAGGGGCCACTACTTATGCTGAAAGCAAAACTGAAGATCTCCCAATCACGAACGATGGATGCTATTGAAACTTACCGCTACCTTCTTGCATTGGTTCAAGCCCAGAAGAAGTCCTTTGGGCCTTTCCGAACTTGTTCAAAGGTCGATGATGATAAAGTAAACGAATTTGAGGTTTGGCATGGTCTGGCAAATTTATATGCTAGCCTTTCTCATTGGAAGGATGCTGAAATCTGTTTGCAGAAGGCCAAGGATTTGAAGGAGAACTCCGCAGCAATAATGCACACAGAAGGTGTCTTGTTCGAAGGACGCGGGCAAAATCAAGAAGCTCTCAGTGCTGCGATTAATGCTATCCTACTTGAGCCAAACTATGTTCCAAGCAAGATCTTGATGGGTTCTTTGGTTCAGAAATTGGGTTCAGAGGCTTTGCCTGCTGCAAGAAGCTTGCTGTCTGATGCACTTAGGATAGAGCCCACGAACCGCATGGCTTGGTATCACTTGGGATTGGTTCACAAGAATGATGGCCGAATGGGTGATGCTGCTGATTGCTTCCAAGCTGCTTACATGCTTGAAGAATCTGATCCAATTGAAAGTTTCAGCAGCATACATTAA 2085 0.4441 MESSEYESVSIREVHANGSSMAASEVEAKLDEGNIQEAESALREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPSFSEKSPVKKGRTRTESPSSVSQHAASLVLEAIYLKAKSLQKLGKFSEAANDCKRILDAVEKIFYQGIPDIQVDNKLQEIVSHAVELLPELLKLAGCYDEAISAYRRALLSQWNLDNDCCARIQKSFVVFLLYSGVEASPPSLAVQVEGSYVPKNNLEEAILLLMILIRKFCLGKTKWDPSVMEHLTFALSVCNQTSILAKNFEELMPGVYHRIDRWNSLALCHSGAGQNDSALNLLRKSLHKHERPNDLTSLLLAARICSEHPHLAAEGVDHAQRAISNAQGLNEHLKGVGLRMLGLCLGKQAMVASSDFERSCLQSKALESLEEAIRLERNNSDLIFELAVQYAKHRNLTAALRSARHFFNETGGSILKAWILLVLILSAQQKFMEAEVVTDAALDQTARWEQGPLLMLKAKLKISQSRTMDAIETYRYLLALVQAQKKSFGPFRTCSKVDDDKVNEFEVWHGLANLYASLSHWKDAEICLQKAKDLKENSAAIMHTEGVLFEGRGQNQEALSAAINAILLEPNYVPSKILMGSLVQKLGSEALPAARSLLSDALRIEPTNRMAWYHLGLVHKNDGRMGDAADCFQAAYMLEESDPIESFSSIH* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0739 694 Gene3D Tetratricopeptide repeat domain 452 689 IPR011990 GO:0005515
Lja2g0739 694 Gene3D Tetratricopeptide repeat domain 20 212 IPR011990 GO:0005515
Lja2g0739 694 PANTHER CALMODULIN-BINDING PROTEIN 1 693 - -
Lja2g0739 694 SUPERFAMILY TPR-like 407 524 IPR011990 GO:0005515
Lja2g0739 694 PANTHER PROTEIN NPG1 1 693 IPR043376 -
Lja2g0739 694 Pfam Tetratricopeptide repeat 635 679 - -
Lja2g0739 694 SUPERFAMILY TPR-like 118 443 IPR011990 GO:0005515
Lja2g0739 694 SUPERFAMILY TPR-like 539 680 IPR011990 GO:0005515
Lja2g0739 694 SMART tpr_5 118 151 IPR019734 GO:0005515
Lja2g0739 694 SMART tpr_5 548 581 IPR019734 GO:0005515
Lja2g0739 694 SMART tpr_5 302 335 IPR019734 GO:0005515
Lja2g0739 694 SMART tpr_5 652 685 IPR019734 GO:0005515
Lja2g0739 694 SMART tpr_5 582 615 IPR019734 GO:0005515
Lja2g0739 694 Gene3D Tetratricopeptide repeat domain 277 451 IPR011990 GO:0005515
Lja2g0739 694 ProSiteProfiles TPR repeat profile. 652 685 IPR019734 GO:0005515
Lja2g0739 694 SUPERFAMILY TPR-like 49 198 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0739 Lja-Chr2 6694766 6702347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0739 11 693 Calmodulin-binding Proteins AT2G43040 71.616 0.0 979
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0739 K21843 - gmx:100814609 1168.3