Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0733 ATGGCGGATGACGATGGTCATCATCCTTTGTCAAACAACGTTGTCGTCCTTCTTATTGCCATGGGTTCAGCAGCTTTTGTTGTCTCAACCTACCATGTCATAACCATATGCATGTTCCACCAACGCATCACAAACCAAAACCCACCAGAACAGCAGCCTGATGTGGCGGCTCAAACGCTGAACCTCGACCAAAGCGACGCGTCCTCCTCAATGGCACACTTGATTCCAATACACAAGTATCACAAGAAGAAGGTTGAAGCAGATGACGGTGACGACGTTGATGATCTTGAAAGCGACACATGTGCAGTGTGCTTGGGAGATTTCGAGGATGGTGAGGAGCTGAGGACGTTGCCGGAGTGCTTGCACTCTTTCCACGTACCGTGCATTGATACGTGGCTCCATTCCCATTCAAGTTGCCCCATTTGCCGCGCCAGTGCTACTGCTACCCCTTCTCCGTCACTGAATGCGCCACATCACAGCATAGATATGCAACCAGTTGGTGTCCTCTACAATGGGTTGGTAAGATGGTGA 531 0.5028 MADDDGHHPLSNNVVVLLIAMGSAAFVVSTYHVITICMFHQRITNQNPPEQQPDVAAQTLNLDQSDASSSMAHLIPIHKYHKKKVEADDGDDVDDLESDTCAVCLGDFEDGEELRTLPECLHSFHVPCIDTWLHSHSSCPICRASATATPSPSLNAPHHSIDMQPVGVLYNGLVRW* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0733 176 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 2 176 - -
Lja2g0733 176 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 176 IPR044675 -
Lja2g0733 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 148 IPR013083 -
Lja2g0733 176 Pfam Ring finger domain 99 143 IPR001841 -
Lja2g0733 176 SMART ring_2 101 142 IPR001841 -
Lja2g0733 176 CDD RING-H2_RNF111_like 99 143 - -
Lja2g0733 176 SUPERFAMILY RING/U-box 91 148 - -
Lja2g0733 176 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0733 Lja-Chr2 6669229 6669776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0733 13 152 C3H Transcription Factor Family AT3G10910 36.986 1.31e-23 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0733 - - aprc:113870478 180.259