Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0725 ATGCTAGACATGGATAACTACGACGTACAAGAGGAGCTTCTCAACATCGAGGTTGAGATTCAAGACGTTCAAGATCAAATAAATGCCTTAATTGAAAGGCAAGAGAGGCTGTATGAGAGAAAATCCGAGTTGAGTGATATATTGGAAGCGTGTAGAGAATCTGGAAACCAGGTTAATAATGTGGCTCAAACCACTGTTGAAAATTGGAATGGCCCATTTCAATGGGATTCTGAAGCTGATGATCTTAGGTTGAATATTTTTGGCATTTCATCTTACCGTGTAAATCAAAGAGAGATAGTAAATGCCGTATTGAGTGGAAGAGATGTTCTGGTGATTATGGCTGCAGGTGGTGGCAAGAGCCTCTGTTATCAGCTTCCTGCTGTTCTTCGTGATGGGATTGCTCTAGTTGTCAGCCCTTTGATTTCATTAATTCAAGATCAGGTGATGGGTTTGACTGCTTTGGGCATCCCAGCACATAAGTTAACTTCAACAACAAGTAAGGAAGATGAGAAGTTTATATACAAGGCTTTGGAGAAGGGTGAAGGGGAGCTCAAAATATTGTATGTTACTCCTGAAAAGATATCAAAAAGCAAGAGGTTTATGTCAAAAATTGAAAAGTGTCATCATGCTGGTCGCCTCTCACTAATTTCAATTGATGAGGCACATTGCTGTAGTCAGTGGGGTCATGACTTTCGACCTGATTACAAGAACCTTGGTATTCTTAAGGTTCAGTTCCCTAATGTTCCTATGGTTGCTTTGACTGCAACTGCTACTCAGAGGGTCCAAAATGATCTGGTAGAGATGTTGCATATCCCTAGATGTGTCAAATTTGTCAGCACAGTCAATAGGCCAAACTTGTTTTATATGGTGAAGGAAAAGTCATCAGTTGGTAAGGTAGTTATTGATGAAATTGCTGAGTTCATTCAAGAATCTTATCCAAATAAAGAATCAGGGATCGTATATTGCTTCTCTAGGAAGGAATGTGAACAGGTTGCAAAAGAGTTGAGGGAGAGGGGAATTTCAGCTGATCATTATCATGCAGATATGGATGTAAATGCTCGGGAAAAAGTACATATGCGGTGGAGCAATAACAAGCTGCAGGTCATAGTCGGTACGGTAGCTTTTGGTATGGGAATCAACAAACCGGATGTCAGGTTTGTCATCCATCATAGCTTGAGCAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCTGGCCGAGATGGACTTCCTTCTGAATGCGTATTATACTTTCGACCTGGTGATGCTCCCCGGCAGAGTTCAATGGTCTTCTACGAAAATTCAGGATTGCAGAATCTCTATGACATTGTACGATATTGTCAGTCCAAAAGACAATGCCGCCGAAGTGCCTTTTTCCGGCATTTTGCTGAGCCACTACAAGAGTGCAATGGGATGTGCGACATTTGTGCATTCCCAAATGAGGTGACACAGGTGGATGTCTCTGGTCATGCGAAACTGATGGTTTCTTTGTTACAAGATATGCAAGGAAATGATCAAAGGGCAACAATGTTGCAATTGTTCGATAAAATGAAAATTAAACAGAAGGAGCTAGGTACTGAGTTAAAACGGGAGGAAATTGAACATCTCATCTTACAGCTTTTACTGGAGCGTGTTTTGAAAGAAGAATTTCAGCATACGCCTTATGCTACAAATGCTTACGTTGCTGTAGGGCCGTTGGCGAAGCAAATATTGCAAGGGAAGAAGACCGTGAAGCTTGAGATTTATGCTGAAGAGAGAACTAAAGCTGGTGTAAGATCATTGAAACGCTGTCATGGGTCCTCATCCTCTGGTTTGGAACTAAAGCTTGATGAGCTTAGAAAAGAACTGGCTTCTGTTCATGGGGGAATACTCCCACACTCTGTCTTGTCCACTCAACAAATCAGCTTATTATGTTCTCAAAAACCAAACTTGCTGGAACAGTTGGAAAAAGTGATTGGGAAATTGAAGACCGAAAAGTATGGAAAGAGAATACTTGAGCAAATTGAAAAATATTCAGATTTCAAGCCGACTGATGAACAAGTAACTGATGGTAGAGCCGCAAAGAGGTCAAAGACCAAGAAGAACCTTGTTGTTATTGACAGTAGTGAAGATGAAGAAGCATGA 2127 0.4114 MLDMDNYDVQEELLNIEVEIQDVQDQINALIERQERLYERKSELSDILEACRESGNQVNNVAQTTVENWNGPFQWDSEADDLRLNIFGISSYRVNQREIVNAVLSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLISLIQDQVMGLTALGIPAHKLTSTTSKEDEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKIEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKVQFPNVPMVALTATATQRVQNDLVEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKVVIDEIAEFIQESYPNKESGIVYCFSRKECEQVAKELRERGISADHYHADMDVNAREKVHMRWSNNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECVLYFRPGDAPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRSAFFRHFAEPLQECNGMCDICAFPNEVTQVDVSGHAKLMVSLLQDMQGNDQRATMLQLFDKMKIKQKELGTELKREEIEHLILQLLLERVLKEEFQHTPYATNAYVAVGPLAKQILQGKKTVKLEIYAEERTKAGVRSLKRCHGSSSSGLELKLDELRKELASVHGGILPHSVLSTQQISLLCSQKPNLLEQLEKVIGKLKTEKYGKRILEQIEKYSDFKPTDEQVTDGRAAKRSKTKKNLVVIDSSEDEEA* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0725 708 SMART ultradead3 88 291 IPR014001 -
Lja2g0725 708 PANTHER DNA HELICASE RECQ FAMILY MEMBER 10 686 - -
Lja2g0725 708 ProSiteProfiles HRDC domain profile. 600 679 IPR002121 GO:0003676
Lja2g0725 708 Gene3D - 50 282 IPR027417 -
Lja2g0725 708 CDD DEXHc_RecQ1 75 282 - -
Lja2g0725 708 Gene3D - 483 583 IPR036388 -
Lja2g0725 708 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 100 275 IPR014001 -
Lja2g0725 708 Coils Coil 6 40 - -
Lja2g0725 708 Gene3D HRDC domain 603 674 IPR044876 -
Lja2g0725 708 PANTHER ATP-DEPENDENT DNA HELICASE Q1 10 686 - -
Lja2g0725 708 CDD SF2_C_RecQ 283 419 - -
Lja2g0725 708 Pfam DEAD/DEAH box helicase 96 262 IPR011545 GO:0003676|GO:0005524
Lja2g0725 708 Pfam RQC domain 485 588 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lja2g0725 708 Pfam Helicase conserved C-terminal domain 305 409 IPR001650 -
Lja2g0725 708 SMART helicmild6 329 410 IPR001650 -
Lja2g0725 708 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 300 449 IPR001650 -
Lja2g0725 708 Pfam RecQ zinc-binding 422 478 IPR032284 -
Lja2g0725 708 SMART RQC_2 487 584 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lja2g0725 708 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 85 505 IPR004589 GO:0004386|GO:0006310
Lja2g0725 708 Pfam HRDC domain 609 668 IPR002121 GO:0003676
Lja2g0725 708 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 425 IPR027417 -
Lja2g0725 708 Gene3D - 283 479 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0725 Lja-Chr2 6587169 6597092 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0725 94 410 Eukaryotic Initiation Factors Gene Family AT3G13920 23.235 1.33e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0725 K10899 - gmx:100817635 1195.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0725 2 6587169 6597092 Lja2g0725 2 6587169 6597092 ECH