Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0706 ATGGGGTCCAGTGGCAGCAAAGCTTCTTCCTCCTCTTGCAGTTCATCGTCGTCTTCCGGTAGTTTCCGGAAGGGTCGATCCAAGAGGCATAGAGGCTTCCCATCTTATTGTCTTGGAAGTGCATCTGGATCTCGTGACAGTGATAATGACGACCAGGTTTGTGATCAGAATAAAGTGAATGGAAGTGATGCCACATTCACCAGTGGCAATGAAATAGACTCAGGTGAAGTGAAAACAGATTCTTTCAGAAAGGTTAAATCTGATGAATTGCCTTGTATGCCTTCAAACACTGACCTTGATGAGTGTGGCCATGCTTCATCCAGAACTGGTAGCAGCTCTGTCCATGGTTCAACTCAGTCCGTGAACCCTTCAAGCAGATTCCTTTCTCGATTTAGCCTCATTCCTGGTAATATAAGCTTCAGACTTAGCAGAACCACTAGTTTGGGGTCATCTAGACCTTGCCCTGTTTCTTCAGCAAGTCTCTCAATATTTAACAATGAAGATGAGCTGAATCTGAATCCAGGGCCTCCTAGCAGCTTGATTAATAGAAACGAAACTCAACAATGTAGTGACTTGCTTAATGCATCTTTTGCCAATCGAGTGCCTGTACAGTACCATGAAGAGGCTTCTAATAATATAAGTTCTAATTCCCCAACATTGGGTTTGGTTGGCAACTTGCAGAGCAGTTCCACACTTTCTCCTATCCAGGATGTGATTGGAGATGGGAACTTGTTCTCTCCAAGAATTCATCCTGAGACAGAAAATGTTGAGGCTAGACATATGGATAGACGAAATGCCGCTCGAGAACCTGTTGAACGCAATGTTCGTTTTAGCCGAACTTTAAGTGTTGGAAGGCTCCGTGACAGAGTTCTCCGCCGATCAGCAATATCTGACTTCACCTTATGCCCTCTGCAACAAGAGAGAGAAGTGACAGATACTAGTCAGAATAGTGGAAGACAAGTAGGGGAGAGTGATACAAGAGTGTCCCCGTCAGGTCGTCATGCTGCAAGTTCCCGTATTGCATCTGGGTATCCTCTACCCGGCATGTCTAGCTCCTTGTATAGCACCCAAGATTATGCGGTTGAGACTTCACGGTCAAGAGAAACAAGGTATCAGGATCTACTGGAACACAGGTCCAATTTCCTTGAACGGAGAAGAAGGATACGATCCCAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTGTCTGGTCAACATAGAAATGGTCGGTGTACATGTAGAATAAGTGGCCGTGATAACAATTCAAATGATGATACCAATGCTAGAGCTAGCATATCACGAATTGTTATGCTAGCTGAAGCCTTGTTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCCTCCCGTCCTTCCGTGTCTTCTATTGGATCTGTTCCTGCACCTAACGAAGTTGTGGAATCCTTGCCTGTCAAGTTATACACCAAATTGCACAAACATCAAGAAGAACCTGTACAATGCTATATATGCCTTGTGGAGTATGAAGATGAAGACAGCTTGCGAGTACTGCCTTGCCATCATGAATTTCATACAACATGTATAGACAAGTGGCTGAAGGAGATTCATAGGGTTTGCCCACTATGTCGGAGGGACATTTGTATACCTGATTCACTGCCAACGGAGAACTAA 1692 0.4456 MGSSGSKASSSSCSSSSSSGSFRKGRSKRHRGFPSYCLGSASGSRDSDNDDQVCDQNKVNGSDATFTSGNEIDSGEVKTDSFRKVKSDELPCMPSNTDLDECGHASSRTGSSSVHGSTQSVNPSSRFLSRFSLIPGNISFRLSRTTSLGSSRPCPVSSASLSIFNNEDELNLNPGPPSSLINRNETQQCSDLLNASFANRVPVQYHEEASNNISSNSPTLGLVGNLQSSSTLSPIQDVIGDGNLFSPRIHPETENVEARHMDRRNAAREPVERNVRFSRTLSVGRLRDRVLRRSAISDFTLCPLQQEREVTDTSQNSGRQVGESDTRVSPSGRHAASSRIASGYPLPGMSSSLYSTQDYAVETSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRISGRDNNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNEVVESLPVKLYTKLHKHQEEPVQCYICLVEYEDEDSLRVLPCHHEFHTTCIDKWLKEIHRVCPLCRRDICIPDSLPTEN* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0706 563 ProSiteProfiles Zinc finger RING-type profile. 508 550 IPR001841 -
Lja2g0706 563 Pfam Ring finger domain 507 550 IPR001841 -
Lja2g0706 563 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 471 555 IPR013083 -
Lja2g0706 563 MobiDBLite consensus disorder prediction 307 348 - -
Lja2g0706 563 MobiDBLite consensus disorder prediction 307 336 - -
Lja2g0706 563 SMART ring_2 508 549 IPR001841 -
Lja2g0706 563 MobiDBLite consensus disorder prediction 54 75 - -
Lja2g0706 563 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 563 - -
Lja2g0706 563 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 563 - -
Lja2g0706 563 SUPERFAMILY RING/U-box 486 556 - -
Lja2g0706 563 MobiDBLite consensus disorder prediction 1 123 - -
Lja2g0706 563 MobiDBLite consensus disorder prediction 1 22 - -
Lja2g0706 563 MobiDBLite consensus disorder prediction 100 123 - -
Lja2g0706 563 CDD RING-H2_PA-TM-RING 507 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0706 Lja-Chr2 6465816 6470865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0706 46 557 C3H Transcription Factor Family AT5G45290 47.866 3.43e-118 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0706 - - gmx:100786091 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0706 2 6465816 6470865 Lja2g0706 2 6465816 6470865 ECH