Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0700 ATGTTTGCTCCATTTTTATATCTTGTCTTTATTTTCAACTTTGGCTCAAAAGCATCTTCCTCTACATTAGGAAACCAGACGGATCATTTGGCATTGCTCAAATTCAAGGAATCAATATCCAGTGACCCATTTGGAATCCTAGAATCATGGAATAGTTCTACACACTTCTGCAAGTGGCATGGAATTACATGCAGCCCCATGTACCAAAGAGTAACAGAGTTGAACTTAACAACATATCAGCTGAATGGAATCTTGTCACCTCATGTTGGCAATCTCTCTTTTCTGCTAATCCTGGAACTCACAAACAACAACTTCCACGGAGATATCCCACATGAATTGGGTCGGTTGTCACTGTTGCAGCAACTCTACCTCACCAATAACTCATTTGCAGGAGAGATTCCTACGAATTTAACTAGCTGCTTTGATCTCCAAGCCTTAAAGTTAGCTGGAAATATTCTGATTGGCAAGATACCACCTGAAATTCGCTTTCTTCAGAAGCTTCAACTATTTGGGGTTGCGAGAAACAATTTAACTGGTCGAGTCTCACCATTCATTGGGAATCTTTCATCCTTAACGTTTCTATCGATAGCTGTTAATAACTTGAAGGGTAATATTCCACAAGAAATATGCCGCTTCAAGAACTTGACATTTTTTAATGTGGCTGGGAACAAATTGTCAGGTACATTTCCTTCTTGTTTTTACAACATGTCATCTCTTACTCTGTTCTCAATTGTAGACAATCACTTTGATGGCTCTCTTCCACCCAACATGTTCCACACTCTCCCCAATATCCAAGTTTTTTCAATTGCATGGAATCAAATCTCAGGTCCAATCCCGACTTCCATTGCAAATGCTACTACCCTTGTACAACTTGATATCAGTCAAAACAATTTGGTCGGACAAGTTCCGAGTCTAGTGAAGCTGCATGATCTTTGGTTGATAAATTTGGGAAGCAACAATCTAGGTGGTAATTCAACTAACAATTTGTTGTTTTTGAAATCACTCACAAATTGTAGTAAGTTGCAAGGTCTATCCATAGCCGGAAACAATTTTGGTGGTCCTTTACCAAATTCTGTGGGCAGTTTATCCACCCAACTCAGTCAACTATGTCTTGGCGGTAATGACATATCAGGAAAAATTCCCATGGAATTAGGAAATCTTACTAACCTAATGCTTTTGACCATGGAAAGTAACCACTTTGAAGGGACTATTCCGGTTACTTTTGGGAAGTTGCAGAAGATGCAAGTGTTAGAATTGAATGGAAATAAGGTGCAAGGAGATATGCCAGCCTCCATAGGCAACCTCACTCAGTTGTTTCATTTGGATTTAGGACAAAATAAGTTAGAAGGAAATATTCCTTCAAGTATAGGAAAGTGTCAAAAGTTACAGTACCTAAACCTTTCAGGAAACAACCTTAAAGGAATCATACCTATTGAGGTTTTTATTCTTTCCTCATTAACAAACTTGTTGGACTTGTCTCACAACTCACTCAGTGGCAGTCTACCAGAAGAAGTAGGAAGGCTAAAAAATATTGATTGGCTTGATTTCTCTGAGAATAAACTAGCAGGTGATATTCCAGGAACCATTGGAGAATGCATGAGCTTGGAGTATCTTTATTTACAAGGGAATTCCTTTCATGGAATCATACCACCCTCTCTGGTATCACTCAAAGGTCTTAGACGTTTAGATCTTTCACGAAACCGCTTGTCTGGATCAATTCCTAAGGATCTACGAAATATTCTCTTTTTGGAATACTTGAATGTTTCATTCAACATGCTGGAGGGTGAAGTACCAACAAAAGGTGTCTTTCAAAATGTAAGTGCATTAGCGGTGACCGGAAACAAAAAGCTCTGTGGAGGTATTTCAGAGCTGCACCTACTGCCATGTCTTATCAAAGGTATGAAGCATGCAAAACACCATAATTTCAAGTTGATAGCGGTGGTTGTAAGTGTGGTTACTTTTCTTCTCATTATGTCATTTATTCTAACCATCTACTGGATGAGCAAAAGAAACAAGAAATCATCTTCTGATTCACCAACAATAGACCAGTTGGTTAAGATTTCATACCACGACCTGCATCATGGTACTGGTGGGTTCTCAGCTAGAAACTTGATTGGATCAGGAAGTTTTGGTTCAGTGTACATAGGAAATATTGTGTCAGAAGATAAAGATGTTGCCGTAAAGGTCTTGAACCTTCAAAAGAAGGGAGCTCACAAGAGTTTCATTGCTGAATGTAATGCACTAAAAAATATTAGACATCGGAATCTGGTTAAGATCTTAACATGTTGTTCTAGCTCTGACAACAAAGGTCAAGAATTTAAAGCTCTAGTTTTCGAGTACATGAAAAATGGAAGTTTAGAACAGTGGCTTCATCCAAGGAGGGGAAGTGTAGAGCTTCATGAACCACTGGACCTTGAACAAAGATTAAGTATCATCATTGATGTTGCTTATGCTTTACATTATCTGCATCAAGAATGTGAGCAGGTGGTCCTTCATTGTGATATAAAGCCAAGCAATGTCCTTCTTGATGATGACATGGTCGCTCATGTGGGTGATTTCGGCATAGCAAGACTTGTTTCTACCGTTGGTGGTGCCGCTCACCAGCAAACTAGTACAATTGGATTAAAGGGGACTGTTGGCTATGTTCCTCCAGAGTATGGAATGGGCTCTGGAGTTTCCACATATGGTGACATGTATAGCCTCGGAATTCTTATATTGGAAATGCTTACCGCAAGAAGACCTACAGATGAATTGTTTGAAGACAGTCAAAATCTGCATAAGTTTGTTGGAATTTCATTTCCTGATAATCTTTTACAGATTTTAGACCCACCTCTTGTACCAAGAGATGAGGAAACAGTAATAGAAGAAAACAATAGGAATCTTGTTACAACAGCTAAGAAGTGCTTAGTCTCACTTTTTAGGATTGGACTTGCTTGTTCAGTGGAATCACCAAAAGAAAGAATGAATATATTGGATGTCACTAGAGAGCTAAACATAATTAGAGAGGCATTTCTTGCTGGTGATCTCTCTTTTCTTGGGGATTTCACAATTCAAACTCCAAGTCTTATGCCAACTTATGTACTTTTATTCAATGTTTATAAACAAGTGTGTTAA 3114 0.3866 MFAPFLYLVFIFNFGSKASSSTLGNQTDHLALLKFKESISSDPFGILESWNSSTHFCKWHGITCSPMYQRVTELNLTTYQLNGILSPHVGNLSFLLILELTNNNFHGDIPHELGRLSLLQQLYLTNNSFAGEIPTNLTSCFDLQALKLAGNILIGKIPPEIRFLQKLQLFGVARNNLTGRVSPFIGNLSSLTFLSIAVNNLKGNIPQEICRFKNLTFFNVAGNKLSGTFPSCFYNMSSLTLFSIVDNHFDGSLPPNMFHTLPNIQVFSIAWNQISGPIPTSIANATTLVQLDISQNNLVGQVPSLVKLHDLWLINLGSNNLGGNSTNNLLFLKSLTNCSKLQGLSIAGNNFGGPLPNSVGSLSTQLSQLCLGGNDISGKIPMELGNLTNLMLLTMESNHFEGTIPVTFGKLQKMQVLELNGNKVQGDMPASIGNLTQLFHLDLGQNKLEGNIPSSIGKCQKLQYLNLSGNNLKGIIPIEVFILSSLTNLLDLSHNSLSGSLPEEVGRLKNIDWLDFSENKLAGDIPGTIGECMSLEYLYLQGNSFHGIIPPSLVSLKGLRRLDLSRNRLSGSIPKDLRNILFLEYLNVSFNMLEGEVPTKGVFQNVSALAVTGNKKLCGGISELHLLPCLIKGMKHAKHHNFKLIAVVVSVVTFLLIMSFILTIYWMSKRNKKSSSDSPTIDQLVKISYHDLHHGTGGFSARNLIGSGSFGSVYIGNIVSEDKDVAVKVLNLQKKGAHKSFIAECNALKNIRHRNLVKILTCCSSSDNKGQEFKALVFEYMKNGSLEQWLHPRRGSVELHEPLDLEQRLSIIIDVAYALHYLHQECEQVVLHCDIKPSNVLLDDDMVAHVGDFGIARLVSTVGGAAHQQTSTIGLKGTVGYVPPEYGMGSGVSTYGDMYSLGILILEMLTARRPTDELFEDSQNLHKFVGISFPDNLLQILDPPLVPRDEETVIEENNRNLVTTAKKCLVSLFRIGLACSVESPKERMNILDVTRELNIIREAFLAGDLSFLGDFTIQTPSLMPTYVLLFNVYKQVC* 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0700 1037 Gene3D Phosphorylase Kinase; domain 1 662 780 - -
Lja2g0700 1037 ProSiteProfiles Leucine-rich repeat profile. 461 482 IPR001611 GO:0005515
Lja2g0700 1037 ProSiteProfiles Protein kinase domain profile. 699 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0700 1037 PANTHER OS04G0122200 PROTEIN 16 1007 - -
Lja2g0700 1037 SUPERFAMILY Protein kinase-like (PK-like) 672 997 IPR011009 -
Lja2g0700 1037 SUPERFAMILY L domain-like 364 619 - -
Lja2g0700 1037 Gene3D Transferase(Phosphotransferase) domain 1 781 1006 - -
Lja2g0700 1037 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Lja2g0700 1037 Pfam Leucine rich repeat 389 448 IPR001611 GO:0005515
Lja2g0700 1037 Pfam Leucine rich repeat 534 593 IPR001611 GO:0005515
Lja2g0700 1037 SMART serkin_6 699 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0700 1037 ProSitePatterns Protein kinases ATP-binding region signature. 705 728 IPR017441 GO:0005524
Lja2g0700 1037 Gene3D Ribonuclease Inhibitor 182 323 IPR032675 -
Lja2g0700 1037 Gene3D Ribonuclease Inhibitor 324 632 IPR032675 -
Lja2g0700 1037 PANTHER LRR RECEPTOR-LIKE KINASE 16 1007 - -
Lja2g0700 1037 Gene3D Ribonuclease Inhibitor 25 181 IPR032675 -
Lja2g0700 1037 SMART LRR_typ_2 556 579 IPR003591 -
Lja2g0700 1037 SMART LRR_typ_2 116 140 IPR003591 -
Lja2g0700 1037 SMART LRR_typ_2 435 459 IPR003591 -
Lja2g0700 1037 SMART LRR_typ_2 483 508 IPR003591 -
Lja2g0700 1037 SMART LRR_typ_2 188 212 IPR003591 -
Lja2g0700 1037 SUPERFAMILY L domain-like 27 321 - -
Lja2g0700 1037 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
Lja2g0700 1037 Pfam Protein kinase domain 702 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0700 Lja-Chr2 6405638 6409278 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0700 25 1004 Receptor kinase-like Gene Family AT3G47570 44.758 0.0 815
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Lja2g0700 Pkinase 8.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0700 - - gmx:100785561 1303.5