Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0685 ATGGCGGCTCGATCGACCCGTATTGCTATCGTCAACAACGACCGGTGCAAGCCCAACAAGTGCCGCCAGGAGTGTAAGAAGAGTTGCCCCGTTGTCAGAACCGGTAAAAGGTGTATTGAGGTGTCTGCTACGTCGAAGATTGCTGATATATCTGAGGACATGTGCATTGGATGCGGTATTTGTGTTAAGAAATGTCCTTTTGAAGCCATCCAGATTATCAACTTGCCTAAGGATTTGGACAAAGACACCACTCATAGATATGGTCCTAATACTTTTAAGCTGCATAGGCTGCCGGTGCCGAGGCGAGGGCAAGTGCTTGGATTGGTTGGGGCTAATGGAATTGGGAAGTCCACTGCCCTTAAAATATTGGCTGGAAAATTGAAACCAAACTTGGGTCGTTTCACTAACCCCCCTGATTGGCAGGAAATTTTAACCTACTTTCGAGGATCTGAATTGCAGGATTACTTTACTCGTTTTCTAGAGGATAATTTGAAGGTTAGCATCAAGCCTCAGAATGTTGACAACCTTCCAAAAGACGTGCAAGGGAATGTGGGGAAGTTGTTAAAGCAGAATGATGAGAGAGATATAATGTCGGAGCTTTGTGCTGATCTGGAGCTTAACCAGGTTTTGGATCTTAATGTTGGTGATCTTTCAGGTGGTGAGCTCCAAAGGTTTGCCATTGCGATTGCTGCCATGAAGAATGCTGATATATACATGTTTGATGAACCTTCAAATTATCTTGATGTGAAACAGAGGCTGAAAGCTGCCCAAGTCATCCGATCATTGCTCAAGCATAATAACTATGTAATTGTCGTAGAGCACGATCTTAGTGTCTTGGACTACTTATCAGACTTTATTTGCTGTTTGTATGGCAAACCTGGTGCATATGGAGTGGTCACCCTTCCTTTCTCAGTCAGAGAAGGAATCAACATCTTCTTGGCTGGGTTTGTTCCAACAGAAAATCTTAGGTTCCGTGCTGAATCTCTTACGTTCAAGGTTGCTGAGACTCCCCAGGAAAGTGCTGAAGAAACTCAAACATATGCGCGATACAGATACCCAACCATGACCAAAACTCGAGGCAAGTTCGAGCTTCGTGTTGTTGAGGGAGAATTTACTGATTCTCAAATTATTGTGATGCTGGGTGAGAACGGGACAGGAAAGACCACATTTATTCGTATGCTGGCTCAGGCTGGTTCTGATACGGAGATGCCTCAGTTTAATGTTTCATACAAGCCCCAGAAGATTAACCCTAAGTTCGAATCAACTGTTAGACACTTGCTGCACCGTGAAATTCGTAATACATATACTGATCCCCAGTTTGTATCAGATGTTATGAAGCCACTTCTTATCGAACGGTTAATGGACCAAGAAGTTAAAAAACTTTCTGGTGGAGAGTTGCAAACCGTTGCCTTGTGTCTTTGTCTTGGAAAGCCTGCAGACATCTATCTGATAGATGAGCCAAGTGTATCTCTTGATTCTGAACAGCGAATTCGTGCTGCCAAAGTCATTAAGAGGTTTATTCTTCATGCAAAGAAAACAGCTTTTGTGGTTGAGCACGATTTCATCATGGCAAATTATCTTGCTGACAAAGTTATTGTTTTTGAGGGTAAACCTTCAAGGGATTGTATTGCAAACTCCCCACAATCATTGTTGTCTGGCATGAACCTTTTCTTATCACGTCTTGATATAACGTTTAGAAGAGACCCAACTAACTTTCGTCCTAGGATCAACAAAATTGATTCAGCAAAGGACAGAGAACAAAAGGCTGCTGGGTCTTACTATCTTCGTGACTAA 1794 0.4287 MAARSTRIAIVNNDRCKPNKCRQECKKSCPVVRTGKRCIEVSATSKIADISEDMCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRRGQVLGLVGANGIGKSTALKILAGKLKPNLGRFTNPPDWQEILTYFRGSELQDYFTRFLEDNLKVSIKPQNVDNLPKDVQGNVGKLLKQNDERDIMSELCADLELNQVLDLNVGDLSGGELQRFAIAIAAMKNADIYMFDEPSNYLDVKQRLKAAQVIRSLLKHNNYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRAESLTFKVAETPQESAEETQTYARYRYPTMTKTRGKFELRVVEGEFTDSQIIVMLGENGTGKTTFIRMLAQAGSDTEMPQFNVSYKPQKINPKFESTVRHLLHREIRNTYTDPQFVSDVMKPLLIERLMDQEVKKLSGGELQTVALCLCLGKPADIYLIDEPSVSLDSEQRIRAAKVIKRFILHAKKTAFVVEHDFIMANYLADKVIVFEGKPSRDCIANSPQSLLSGMNLFLSRLDITFRRDPTNFRPRINKIDSAKDREQKAAGSYYLRD* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0685 597 SMART AAA_5 102 294 IPR003593 -
Lja2g0685 597 SMART AAA_5 373 539 IPR003593 -
Lja2g0685 597 Gene3D - 336 596 IPR027417 -
Lja2g0685 597 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 55 66 IPR017900 -
Lja2g0685 597 Pfam Possible Fer4-like domain in RNase L inhibitor, RLI 6 37 IPR007209 -
Lja2g0685 597 ProSitePatterns ABC transporters family signature. 217 231 IPR017871 GO:0005524
Lja2g0685 597 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 46 75 IPR017896 -
Lja2g0685 597 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 348 561 IPR003439 GO:0005524
Lja2g0685 597 PRINTS ABC transporter family E signature 79 99 IPR013283 -
Lja2g0685 597 PRINTS ABC transporter family E signature 24 39 IPR013283 -
Lja2g0685 597 PRINTS ABC transporter family E signature 156 182 IPR013283 -
Lja2g0685 597 PRINTS ABC transporter family E signature 52 76 IPR013283 -
Lja2g0685 597 PRINTS ABC transporter family E signature 140 156 IPR013283 -
Lja2g0685 597 PRINTS ABC transporter family E signature 107 132 IPR013283 -
Lja2g0685 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 535 IPR027417 -
Lja2g0685 597 Gene3D - 1 332 IPR027417 -
Lja2g0685 597 CDD ABC_RNaseL_inhibitor_domain1 78 332 IPR034348 -
Lja2g0685 597 Pfam ABC transporter 367 488 IPR003439 GO:0005524
Lja2g0685 597 PANTHER - 1 596 - -
Lja2g0685 597 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 596 IPR013283 -
Lja2g0685 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 289 IPR027417 -
Lja2g0685 597 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 70 315 IPR003439 GO:0005524
Lja2g0685 597 Pfam 4Fe-4S binding domain 50 71 IPR017896 -
Lja2g0685 597 SUPERFAMILY 4Fe-4S ferredoxins 10 85 - -
Lja2g0685 597 Pfam ABC transporter 102 245 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0685 Lja-Chr2 6199201 6202742 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0685 97 279 Calmodulin-binding Proteins AT2G36910 27.551 7.81e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0685 K06174 - gmx:100797423 1033.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0685 2 6199201 6202742 Lja2g0685 2 6199201 6202742 ECH