Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0679 ATGCCACAGAACTGCATAGCACCAAAACCAGAACAATTCAATAGTAATCACTCTGAAAATGGACCTCCAGAGATGGCTGAGCCTCATAACTCAAGTGTCGTCGCCTACCCCATGCAAACCAATCAACAATCTCTACCAAAACTCATCATGTTCCCAATAATTTTGAAGTTTGAGGAATTGCTGTACAAAGTTAAACTAGAGCAGAAAAGAATGTGTTGGGGCAGTAAAGGGAGTTGCAAAGAGAAAACAATACTGAATGGAATCACAGGCATGGTGTGTCCTGGAGAAATTCTAGCTATGTTGGGGCCATCAGGTAGTGGTAAAACCACACTTCTCACAGCTCTGGGAGGGAGACTCAATGGTAAACTATCTGGAAAAATCACATATAATAATCAACCTTTCTCTGGTGCCATAAAAAGAAGAACAGGTTTTGTGGCTCAGGATGATGTGCTTTACCCTCACCTCACAGTCACTGAAACTCTAGTGTTCACTGCACTTCTGAGGCTGCCAAAAACATTGACCAGAGATGAAAAAGTTCAGCATGTGGAGAGAGTTATCACTGAGCTAGGACTGAGTGGTTGCAGAAGCAGCATGATTGGAGGACCTCTTTTGAGAGGGATATCAGGTGGTGAGAAAAGGAGGGTGAGCATAGGACAAGAAATGCTCATCAATCCAAGCCTGTTGTTGCTGGATGAGCCAACTTCAGGTTTGGATTCCACCACTGCTTTGAGGATTCTCAACACCATCAAACGCCTTGCAACCGGTGGCAGAACTGTTGTCACCACCATTCATCAACCCTCTAGCCGGCTTTACTACATGTTTGACAAGGTGGTTCTTCTCTCTGAAGGGTGCCCCATCTACTATGGTCCTGCTTCAACTGCCCTTGAGTACTTTTCATCTGTTGGTTTCTCCACTTGTGTCACTGTTAATCCAGCTGATCTCTTACTTGATCTTGCCAATGGGATTGGCCCAGACTCCAAGCATGTTACTGAACAAAGTGAGGGCCTGGAACAGGAGAGGAAGATGGTGAGAGAATCTCTCATCACAGCTTATGACCAGAACATAGCTACAAAGCTGAAAGCTGAGGTTTGCAGCCTGGAGGTGAACAATTACAATTTCACAAAAGATGCTATGTCAAAAAATCACATAAGACCAGAGCAATGGTGCACAAGCTGGTGGTATCAGTTCAAGGTGTTGTTACAGAGGGGAGTGAGGGAGAGAAGATATGAAGCCTTCAACAGGCTGAGAATATTCCAAGTCATAAGTGTTGCTTTCCTTGGTGGACTCTTGTGGTGGCATACACCAGAATCACACATTCAAGACAGGGTGGCTTTGCTTTTTTTCTTCTCAGTTTTCTGGGGATTCTACCCTCTCTACAATGCAGTTTTCACATTTCCTCAAGAGAGGAGAATGTTGATCAAGGAACGGTCATCAGGAATGTACCGCCTTTCTTCTTACTTCCTAGCAAGAACAATAGGAGACCTACCTCTGGAGCTTGCACTTCCAACAGCATTTGTCTTCATAATCTATTGGATGGGAGGGCTTAAACCTGATCCTATGACTTTCATCCTTTCTCTTGTTGTGGTTCTTTACAGTGTTGTTGTCTCTCAAAGTCTCGGCCTCGCATTCGGTGCTATTTTGATGGAGGTTAAACAAGCCACAACTCTAGCTTCTGTGACAACTCTTGTGTTTCTCATTGCTGGAGGGTACTACATACAACAGATTCCTCCCTTCATAGTATGGCTCAAGTACTTGAGCTATAGCTTCTACTGTTACAAGCTTCTTCTTGGTGTCCAATACAATGAAAATGATTACTATGAATGCTCAGAAGGGAAGTTCTGCAAGGCTGTGGATTTTCCTCCCATAAAATCAATGGGTTTGGATCATCTGTGGGTTGATGTGTTCATCATGGCCTTGATGTTGGTCGGTTATCGACTCTTAGCTTATTTTGCACTGCATAGAGTTAGGTAG 1971 0.4394 MPQNCIAPKPEQFNSNHSENGPPEMAEPHNSSVVAYPMQTNQQSLPKLIMFPIILKFEELLYKVKLEQKRMCWGSKGSCKEKTILNGITGMVCPGEILAMLGPSGSGKTTLLTALGGRLNGKLSGKITYNNQPFSGAIKRRTGFVAQDDVLYPHLTVTETLVFTALLRLPKTLTRDEKVQHVERVITELGLSGCRSSMIGGPLLRGISGGEKRRVSIGQEMLINPSLLLLDEPTSGLDSTTALRILNTIKRLATGGRTVVTTIHQPSSRLYYMFDKVVLLSEGCPIYYGPASTALEYFSSVGFSTCVTVNPADLLLDLANGIGPDSKHVTEQSEGLEQERKMVRESLITAYDQNIATKLKAEVCSLEVNNYNFTKDAMSKNHIRPEQWCTSWWYQFKVLLQRGVRERRYEAFNRLRIFQVISVAFLGGLLWWHTPESHIQDRVALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTIGDLPLELALPTAFVFIIYWMGGLKPDPMTFILSLVVVLYSVVVSQSLGLAFGAILMEVKQATTLASVTTLVFLIAGGYYIQQIPPFIVWLKYLSYSFYCYKLLLGVQYNENDYYECSEGKFCKAVDFPPIKSMGLDHLWVDVFIMALMLVGYRLLAYFALHRVR* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0679 656 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 55 307 IPR003439 GO:0005524
Lja2g0679 656 CDD ABCG_EPDR 52 289 - -
Lja2g0679 656 Pfam ABC transporter 85 235 IPR003439 GO:0005524
Lja2g0679 656 Gene3D - 74 301 IPR027417 -
Lja2g0679 656 ProSitePatterns ABC transporters family signature. 207 221 IPR017871 GO:0005524
Lja2g0679 656 Pfam ABC-2 type transporter 394 600 IPR013525 GO:0016020|GO:0140359
Lja2g0679 656 Pfam ABC-2 type transporter 264 360 IPR043926 GO:0140359
Lja2g0679 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 299 IPR027417 -
Lja2g0679 656 SMART AAA_5 94 284 IPR003593 -
Lja2g0679 656 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 37 654 - -
Lja2g0679 656 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 37 654 - -
Lja2g0679 656 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0679 Lja-Chr2 6162877 6166719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0679 84 283 Calmodulin-binding Proteins AT2G36910 29.665 2.41e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0679 K05681 - gmx:100780191 1187.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0679 2 6162877 6166719 Lja2g0679 2 6162877 6166719 ECH