Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0676 ATGGCCTCTCACAATACCAATTCCATTCTTTGGAGATTTTTCTTGGCTATTGTGATTGCAACCATTTTTACTCCAAACCTTAGTTCTGCAAAGAAATCCAAGATAATTGGCCTGAAAATGAATGTAATTGATCGATGCTGGAGACCAAATCCTGAATGGAGGAGGCATCGATCTCAACTAGCCACTTGCTCTGTGGGTTATGCTGGCAAGATGAAAAACAATATTGGTGATGACCTCATCCATTATAAAGTTACTGACCCTAGTGATGACCCAATAAATCCAAGACCTGGCACCTTGAGGTATGGAGCTTCGGTAATTCAAGGTAAAGTGTGGATCAAATTCCAAAGAGACATGAAAATTAGGCTTGAGAAACCTCTTCTTATTAGTAGTTTCACCACCATTGATGGTCGAGGCGTAAACGTCAACATAGCTGATAATGCATGCTTGATGATCTATAAGACCACAAACATAATCATCCATGGCATTCGAATTCATCATTGCAAAGCTCAAGCTCCAGGAATGGTGATGGGGCCTAATGGAAAAGTTATGCCTTTGGGGCAAGTAGATGGGGATGCAATTAGATTGATTACAGCTTCAAAAATTTGGATTGATCATAACACGCTTTATGACTGCGAAGATGGCCTTCTTGATGTCACACGAGGTTCAACTAATGTGACTGTGTCCAACAATTGGTTTAGAGATCAAGACAAAGTTATGCTTCTTGGCCACGATGATGGATATGTCAGAGACCAAAACATGAAGGTTACAGTTGTGTACAACCATTTTGGACCTAACTGCAACCAACGTATGCCCAGAATTCGCTATGGATATGCACATGTAGCCAATAATCGTTACCAGGGTTGGTTGCAATATGCCATTGGTGGAAGCATGGAACCTAGTCTCAAAAGTGAAGCTAACCTCTTCATAGCACCGACTGCTGGAAATAAGGAGGTAACGTGGAGAAAAGCTAGCCATACAAATGGGGATAGATGGGAATTCCATTCAGTAGGGGATGTTTTTGAAAATGGAGCCTCCTTCACCGAAACAAAAGGAAATGGTGGACGTGTGTGTAAGCCGAATTACAATGGGGAACAAGATTTTGAAGTTTCTGATGCCAAGTCTGTAAAATCATTGACAATGTGGTCGGGTGCACTTCGGTGCAGCAAAACCTCTATGTGTTAA 1182 0.4162 MASHNTNSILWRFFLAIVIATIFTPNLSSAKKSKIIGLKMNVIDRCWRPNPEWRRHRSQLATCSVGYAGKMKNNIGDDLIHYKVTDPSDDPINPRPGTLRYGASVIQGKVWIKFQRDMKIRLEKPLLISSFTTIDGRGVNVNIADNACLMIYKTTNIIIHGIRIHHCKAQAPGMVMGPNGKVMPLGQVDGDAIRLITASKIWIDHNTLYDCEDGLLDVTRGSTNVTVSNNWFRDQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRYGYAHVANNRYQGWLQYAIGGSMEPSLKSEANLFIAPTAGNKEVTWRKASHTNGDRWEFHSVGDVFENGASFTETKGNGGRVCKPNYNGEQDFEVSDAKSVKSLTMWSGALRCSKTSMC* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0676 393 SUPERFAMILY Pectin lyase-like 63 383 IPR011050 -
Lja2g0676 393 Gene3D - 40 386 IPR012334 -
Lja2g0676 393 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Lja2g0676 393 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Lja2g0676 393 PRINTS Pollen allergen Amb family signature 364 387 IPR018082 -
Lja2g0676 393 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Lja2g0676 393 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Lja2g0676 393 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Lja2g0676 393 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Lja2g0676 393 PANTHER PECTATE LYASE 3 390 - -
Lja2g0676 393 PANTHER PECTATE LYASE 18-RELATED 3 390 IPR045032 GO:0030570
Lja2g0676 393 Pfam Pectate lyase 128 308 IPR002022 -
Lja2g0676 393 SMART amb_all 117 314 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0676 Lja-Chr2 6131625 6133137 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0676 71 318 Polysaccharide Lyase AT5G09280 71.371 7.40e-142 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0676 K01728 - gmx:100780437 670.618