LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g0675	ATGGCAACTCCTTCTTCTTCTTCTTGTTCAGAGTCAATGGGAGTTACAGATACATGGAAGGCCCATTTGGGCATGGCGATGGTGCAGCTATTCTATGGCGGCTACCATGTCATCACCAAGGTTGCCCTCAATGATGGGGTCAACCAACTAGTCTTCTGCCTCTACCGTGATCTCCTTGCCTTCTGCATTCTTGCTCCCATCGCTTTCTTCAAAGAAAGGCGATCAAGACCGCCTATTAATAAGAAGCTATTGATGTCATTCTTCTTTCTTGGATTAACGGGGATATTTGGCACCCAGCTCTTGTTTCTCATTGGTTTAAGTTATACAAATCCAACTTATGCTGCTGCTGTACAGCCAGCCATTCCAGTCTTTACATTTCTGTTTACCGTAATGATGGGTACAGAAAGAGTGAACTTGCTCAGATATGAAGGTCTGGCAAAGGTTGGAGGAACTATTATCTGTGTTTCTGGTGCCATATTGATGGTGTTTTATCGTGGTCCATCTGTGGTAGGATCTAGAGAAATGGGTCACAAAGCACGGAGTGAAATAAGGGCCCAAGGTCAGCCAGAGCCTTCTGGATGGTTAATCAGTGGCTTGCAGGATCTTGGATTAGACAATTTTAAAATTGGGGCTATGTGCTTGGTAGTAGAATGTATTGGCATGGCTGCTTTTCTAGCTATTCAGGCACCAGTATTAAAAAAGTATCCTGCAAACCTATCTGTCACAGCATATTCATTCTTCTTTGGAGTTGTACTAATGGTGGCCGTATCATTTTTCATGACAAATGGGTCGACTGACTGGATTTTGACGCGGTCAGAAATACTTGCCGTTATTTATTCTGGAACTATTGCATCTGCCCTTAATTATGGAATCATGACATGGAGCAACAAGATCTTAGGGCCAGCTTTGATTTCCCTTTATAATCCACTTCAACCTCTTTTCTCTTCCATAATGTCCCAAATTTTCCTTGGAAGGTCAATGGGAGTTAAAGATACATGGAAGTCCCATTTGGGCTTGGCGATGGTGCAGCTATTCTATGGTGGCTACCATGTCATCACCAAAGTGGCCCTGAATGATGGGGTCAACCAACTTGTCTTCTGCTTCTACCGGGATCTCCTTGCCTTCTGCATTCTTGCTCCCATCGCTTTCTTCAAAGAAAGACAGACACGACCACCCATTACTAAGAACCTCCTGATGTCATTCTTCTTTCTTGGATTAACTGGGATATTTGGCAACCAACTTCTGTTTCTCATTGGTTTAAGCTATACTAATCCAACTTATGCTGCAGCCATACAGCCAGCCATTCCAGTCTTTACATTTCTGCTAGCCGTAATGATGGGTACAGAAAGAGTGAATATACTCCGGAATGATGGTCTGGCAAAGGTTGTAGGAACTCTTATCTGTGTTTCTGGTGCCGTATTGATGGTCCTGTATCGTGGTGCGGTTTTGATAGGATATGTAGAAATTAATCATGCAGCACATAATGAAATAAGTGCCAAAGGTCAGCCAGAGACTTCTGGATGGTTAATGGGTGGTTTTCTGGATCTTGGGTTCGACCAATTTCATCTTGGAGTTCTGTGCTTGATAGGGAACTGCATGTGCATGGCCGCTTTTCTAGCCATTCAGGCACCGGTATTAAGAAAATATCCTGCAAACCTATCTGTCACAGCGTATTCATACTTCTTCGGAGCAGTACTGATGGTGACAGTGTCATTATTCATGACTAATGAGTCAACTGACTGGAGTTTAACTTCGTCAGAATTGCTTGCTGTTATATATGCTGGAATTATTGCATCTGCCCTTAACTATGGACTCATTACATGGTGCAACAAGATCTTGGGACCAGCTTTGGTTTCCCTTTACAATCCACTTCAACCTGCGTTTTCTGCCTTCCTGTCCCAAGTTTTCCTTGGAAGTCCAATTTACTTGGGAAGTATCATAGGGGGATCTTTTATCATTGCTGGTCTGTACACTGTTACTTGGGGATCATATAAAGAAAGACAGGCAACTGTTGGAGTTACTCCAAATGGCTCTTGGGTCTCTGAACCACTTATTCATGAAAAAAGTGCATACCAGAAAGGTCTCATTTTTTCAGGGTCCTCTAGTGTTGTATCCCCAAAGTCATCAGATTAA	2133	0.4304	MATPSSSSCSESMGVTDTWKAHLGMAMVQLFYGGYHVITKVALNDGVNQLVFCLYRDLLAFCILAPIAFFKERRSRPPINKKLLMSFFFLGLTGIFGTQLLFLIGLSYTNPTYAAAVQPAIPVFTFLFTVMMGTERVNLLRYEGLAKVGGTIICVSGAILMVFYRGPSVVGSREMGHKARSEIRAQGQPEPSGWLISGLQDLGLDNFKIGAMCLVVECIGMAAFLAIQAPVLKKYPANLSVTAYSFFFGVVLMVAVSFFMTNGSTDWILTRSEILAVIYSGTIASALNYGIMTWSNKILGPALISLYNPLQPLFSSIMSQIFLGRSMGVKDTWKSHLGLAMVQLFYGGYHVITKVALNDGVNQLVFCFYRDLLAFCILAPIAFFKERQTRPPITKNLLMSFFFLGLTGIFGNQLLFLIGLSYTNPTYAAAIQPAIPVFTFLLAVMMGTERVNILRNDGLAKVVGTLICVSGAVLMVLYRGAVLIGYVEINHAAHNEISAKGQPETSGWLMGGFLDLGFDQFHLGVLCLIGNCMCMAAFLAIQAPVLRKYPANLSVTAYSYFFGAVLMVTVSLFMTNESTDWSLTSSELLAVIYAGIIASALNYGLITWCNKILGPALVSLYNPLQPAFSAFLSQVFLGSPIYLGSIIGGSFIIAGLYTVTWGSYKERQATVGVTPNGSWVSEPLIHEKSAYQKGLIFSGSSSVVSPKSSD*	711

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lja2g0675	710	SUPERFAMILY	Multidrug resistance efflux transporter EmrE	369	478	-	-
Lja2g0675	710	Pfam	EamA-like transporter family	523	660	IPR000620	GO:0016020\|GO:0016021
Lja2g0675	710	Pfam	EamA-like transporter family	339	476	IPR000620	GO:0016020\|GO:0016021
Lja2g0675	710	Pfam	EamA-like transporter family	23	160	IPR000620	GO:0016020\|GO:0016021
Lja2g0675	710	Pfam	EamA-like transporter family	211	332	IPR000620	GO:0016020\|GO:0016021
Lja2g0675	710	PANTHER	WAT1-RELATED PROTEIN	18	326	-	-
Lja2g0675	710	PANTHER	WAT1-RELATED PROTEIN	334	702	IPR030184	GO:0016021\|GO:0022857
Lja2g0675	710	PANTHER	WAT1-RELATED PROTEIN	334	702	-	-
Lja2g0675	710	SUPERFAMILY	Multidrug resistance efflux transporter EmrE	561	665	-	-
Lja2g0675	710	SUPERFAMILY	Multidrug resistance efflux transporter EmrE	246	329	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g0675	Lja-Chr2	6099625	6129613	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g0675	418	689	Nodulin-like Gene Family	AT5G45370	64.493	7.57e-123	366

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g0675	-		-	gmx:100787738	606.675

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja2g0675	2	6099625	6129613	Lja2g0675	2	6099625	6129613	ECH
	Lja2g0675	2	6099625	6129613	Lja4g3018	4	56403373	56409589	PCT

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