Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0675 ATGGCAACTCCTTCTTCTTCTTCTTGTTCAGAGTCAATGGGAGTTACAGATACATGGAAGGCCCATTTGGGCATGGCGATGGTGCAGCTATTCTATGGCGGCTACCATGTCATCACCAAGGTTGCCCTCAATGATGGGGTCAACCAACTAGTCTTCTGCCTCTACCGTGATCTCCTTGCCTTCTGCATTCTTGCTCCCATCGCTTTCTTCAAAGAAAGGCGATCAAGACCGCCTATTAATAAGAAGCTATTGATGTCATTCTTCTTTCTTGGATTAACGGGGATATTTGGCACCCAGCTCTTGTTTCTCATTGGTTTAAGTTATACAAATCCAACTTATGCTGCTGCTGTACAGCCAGCCATTCCAGTCTTTACATTTCTGTTTACCGTAATGATGGGTACAGAAAGAGTGAACTTGCTCAGATATGAAGGTCTGGCAAAGGTTGGAGGAACTATTATCTGTGTTTCTGGTGCCATATTGATGGTGTTTTATCGTGGTCCATCTGTGGTAGGATCTAGAGAAATGGGTCACAAAGCACGGAGTGAAATAAGGGCCCAAGGTCAGCCAGAGCCTTCTGGATGGTTAATCAGTGGCTTGCAGGATCTTGGATTAGACAATTTTAAAATTGGGGCTATGTGCTTGGTAGTAGAATGTATTGGCATGGCTGCTTTTCTAGCTATTCAGGCACCAGTATTAAAAAAGTATCCTGCAAACCTATCTGTCACAGCATATTCATTCTTCTTTGGAGTTGTACTAATGGTGGCCGTATCATTTTTCATGACAAATGGGTCGACTGACTGGATTTTGACGCGGTCAGAAATACTTGCCGTTATTTATTCTGGAACTATTGCATCTGCCCTTAATTATGGAATCATGACATGGAGCAACAAGATCTTAGGGCCAGCTTTGATTTCCCTTTATAATCCACTTCAACCTCTTTTCTCTTCCATAATGTCCCAAATTTTCCTTGGAAGGTCAATGGGAGTTAAAGATACATGGAAGTCCCATTTGGGCTTGGCGATGGTGCAGCTATTCTATGGTGGCTACCATGTCATCACCAAAGTGGCCCTGAATGATGGGGTCAACCAACTTGTCTTCTGCTTCTACCGGGATCTCCTTGCCTTCTGCATTCTTGCTCCCATCGCTTTCTTCAAAGAAAGACAGACACGACCACCCATTACTAAGAACCTCCTGATGTCATTCTTCTTTCTTGGATTAACTGGGATATTTGGCAACCAACTTCTGTTTCTCATTGGTTTAAGCTATACTAATCCAACTTATGCTGCAGCCATACAGCCAGCCATTCCAGTCTTTACATTTCTGCTAGCCGTAATGATGGGTACAGAAAGAGTGAATATACTCCGGAATGATGGTCTGGCAAAGGTTGTAGGAACTCTTATCTGTGTTTCTGGTGCCGTATTGATGGTCCTGTATCGTGGTGCGGTTTTGATAGGATATGTAGAAATTAATCATGCAGCACATAATGAAATAAGTGCCAAAGGTCAGCCAGAGACTTCTGGATGGTTAATGGGTGGTTTTCTGGATCTTGGGTTCGACCAATTTCATCTTGGAGTTCTGTGCTTGATAGGGAACTGCATGTGCATGGCCGCTTTTCTAGCCATTCAGGCACCGGTATTAAGAAAATATCCTGCAAACCTATCTGTCACAGCGTATTCATACTTCTTCGGAGCAGTACTGATGGTGACAGTGTCATTATTCATGACTAATGAGTCAACTGACTGGAGTTTAACTTCGTCAGAATTGCTTGCTGTTATATATGCTGGAATTATTGCATCTGCCCTTAACTATGGACTCATTACATGGTGCAACAAGATCTTGGGACCAGCTTTGGTTTCCCTTTACAATCCACTTCAACCTGCGTTTTCTGCCTTCCTGTCCCAAGTTTTCCTTGGAAGTCCAATTTACTTGGGAAGTATCATAGGGGGATCTTTTATCATTGCTGGTCTGTACACTGTTACTTGGGGATCATATAAAGAAAGACAGGCAACTGTTGGAGTTACTCCAAATGGCTCTTGGGTCTCTGAACCACTTATTCATGAAAAAAGTGCATACCAGAAAGGTCTCATTTTTTCAGGGTCCTCTAGTGTTGTATCCCCAAAGTCATCAGATTAA 2133 0.4304 MATPSSSSCSESMGVTDTWKAHLGMAMVQLFYGGYHVITKVALNDGVNQLVFCLYRDLLAFCILAPIAFFKERRSRPPINKKLLMSFFFLGLTGIFGTQLLFLIGLSYTNPTYAAAVQPAIPVFTFLFTVMMGTERVNLLRYEGLAKVGGTIICVSGAILMVFYRGPSVVGSREMGHKARSEIRAQGQPEPSGWLISGLQDLGLDNFKIGAMCLVVECIGMAAFLAIQAPVLKKYPANLSVTAYSFFFGVVLMVAVSFFMTNGSTDWILTRSEILAVIYSGTIASALNYGIMTWSNKILGPALISLYNPLQPLFSSIMSQIFLGRSMGVKDTWKSHLGLAMVQLFYGGYHVITKVALNDGVNQLVFCFYRDLLAFCILAPIAFFKERQTRPPITKNLLMSFFFLGLTGIFGNQLLFLIGLSYTNPTYAAAIQPAIPVFTFLLAVMMGTERVNILRNDGLAKVVGTLICVSGAVLMVLYRGAVLIGYVEINHAAHNEISAKGQPETSGWLMGGFLDLGFDQFHLGVLCLIGNCMCMAAFLAIQAPVLRKYPANLSVTAYSYFFGAVLMVTVSLFMTNESTDWSLTSSELLAVIYAGIIASALNYGLITWCNKILGPALVSLYNPLQPAFSAFLSQVFLGSPIYLGSIIGGSFIIAGLYTVTWGSYKERQATVGVTPNGSWVSEPLIHEKSAYQKGLIFSGSSSVVSPKSSD* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0675 710 SUPERFAMILY Multidrug resistance efflux transporter EmrE 369 478 - -
Lja2g0675 710 Pfam EamA-like transporter family 523 660 IPR000620 GO:0016020|GO:0016021
Lja2g0675 710 Pfam EamA-like transporter family 339 476 IPR000620 GO:0016020|GO:0016021
Lja2g0675 710 Pfam EamA-like transporter family 23 160 IPR000620 GO:0016020|GO:0016021
Lja2g0675 710 Pfam EamA-like transporter family 211 332 IPR000620 GO:0016020|GO:0016021
Lja2g0675 710 PANTHER WAT1-RELATED PROTEIN 18 326 - -
Lja2g0675 710 PANTHER WAT1-RELATED PROTEIN 334 702 IPR030184 GO:0016021|GO:0022857
Lja2g0675 710 PANTHER WAT1-RELATED PROTEIN 334 702 - -
Lja2g0675 710 SUPERFAMILY Multidrug resistance efflux transporter EmrE 561 665 - -
Lja2g0675 710 SUPERFAMILY Multidrug resistance efflux transporter EmrE 246 329 - -
Lja2g0675 710 SUPERFAMILY Multidrug resistance efflux transporter EmrE 55 162 - -
Lja2g0675 710 PANTHER WAT1-RELATED PROTEIN 18 326 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0675 Lja-Chr2 6099625 6129613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0675 418 689 Nodulin-like Gene Family AT5G45370 64.493 7.57e-123 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0675 - - gmx:100787738 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0675 2 6099625 6129613 Lja2g0675 2 6099625 6129613 ECH
Lja2g0675 2 6099625 6129613 Lja4g3018 4 56403373 56409589 PCT