Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0659 ATGGAGTTTGAACCTCTGGTTCTAAGCAATGAGGTTATTGAATTTGATATGATTGGTTTGGGGGATGATGCTGCTGCCATTGACATTGAGCATCCTGTTGAAGATGATGATGAGTTTGTTAATGGGGGAAACAATGATCCTGTTTTTGCTATTACCAGTTCAGCTGCTACTGGGGGACCTCTCATCCCTGGAGGGGGTGACTCAATTCTTGAACCTTGTCAAGGTATGGATTTTGAATCAGAAGAGGCTGCTAAGGCCTTTTACAATTCGTATGCTCGCCGTGTTGGTTTTAGCACGCGGGTGAGCATGTCTCGCCGCTCCAGGCGAGATGGTGCTATAATTCAGAGGTCTTTTGTGTGTGCCAAGGAAGGTTTTCGTGTCGAGAAGGAGAGGCATCTTGAGGGCAGAGTCAAGCGGCCTCGTGTCGAGACTCGTGTTGGTTGCAAGGCCATGTTGGTTGTGAAAATACAAGATTCTGGCAGATGGGTTGTCTCTTCCTTTGTCAAGGAACACAACCATGAATTGGTTCCGCCTGATAAGGTGCACTGTCTTCGCTCTCATCGCCATGTTTCAGGTCCAGCTAAGTCATTGATTGATACCTTGCAGGGTGCCGGAATAGGGCCCAGTGGAATTATGTCTGCTCTTATCAAAGAATATGGTGGAATTACCAATATCGGTTTCACCGAGCGTGACTGTAGGAATTATATGAGGAGCAGTAGGCAAAGGACCCTTGGAGGTGACACTCAAATCCTTTTGGATTACTTTAAGAGCAAAGAAGCAGAGAATCCTTCATTTTTTTATGCTGTGCAGGGTGATGAAGATAATTGCATGAGTAATATCTTATGGGTTGATCATAAGGCCAGGACTAACTACACTTACTTTGGTGACACTGTCACTTTTGACACAACATATAGGTCGAACCGCTATAGATTGCCTTTTGCACCTTTCACTGGAGTAAATCATCATGGACAGCCTGTGTTATTTGGTTGTGCTCTCCTGATCAATGAGTCCGAGGCATCTTTTGTTTGGCTGTTCGAAACCTGGCTTGAAGCAATGTCAAGGCGACCTCCAGTTTCAATTACTACTGATCATGATAGGGTGATTCGTGGAGCCATCAACCATGTCTTTCCTGATACCCGTCACCGATTTTGCAAGTGGCACATTTTTAAAGAATGCCAAGAGAAGTTGTCTCATGTGCTTTCTGAACACCATGATTTTGAAGCTGACCTCCATAAATGTGTTAACCTAACAGAGTCCATTGAGGAGTTTGAGTCTTGTTGGTCCTCTCTAATTGATAGGTATGGTCTCAGAGAACATGAATGGCTCCAAGAGATTTATGGTTATCGGCGGCAGTGGGTTCCAGTGTACTTGAGGGACTCATTTTTCGCAGAAATGTCAATAACACAACGGAGTGATAGCATAAACTCTTATTTTGATGGCTATATCAATGCATCAACAACACTTCAGCTTTTTGTTAAACAGTATGAGAAGGCTTTGGAGAGCCGTTATGAGAAAGAAGTCAAAGCTGATTATGACACAATAAACACTGCTCCACTACTGAAGACCCCATCTCCCATGGAGAAACAGGCAGCTGGAGTTTACACAAGGAGGTTGTTTATCAAATTTCAGGAAGAGTTGGTTGAGACATTAACTTTCTTGGCAAACAAAGTAGGTGAAGAAGAAATGATTACTGTGTATAGAGTAGCCAAATATGGGGAAAGTCACAAGGCATACTTTGTCAGATTTAACTTTTCTGAGATAAAAGCTACTTGTAGTTGCCAGATGTTTGAGTTTTCTGGTATAGTTTGTCGACATATATTGACTGTTTTTAGGGTGACAAATATTCTTACCTTACCATCTCATTATATTTTAAAAAGATGGAGCAGGAATGCCAAAAGTGGTGTCATACTGGATGACCATACTACTGATTTGTTAAATGGTGGACAAGAATCTCTAACTATCCGATACAATAATCTTCGCCGTGAGGCCCTTAAGTATGCTGATAAGGGAGTAAGCTCTCCAAAAGTTTATGATGTGGCTATGAGTGCTCTTCGGGAGGCAGCAAATAAAGTGGAAGCTGCGTCAAAAAATGGTGGAAGACTGGTTATTTTGGATGGAGCTTGTAAAGAAGACCTTCGTCAGGGAAACGAAGCAATAACAAGTTGTAGTAATGCTCAATTAAGTTCACAAATATCTTCGTCTACGGATGACCATGACAGAACAATTGGAAAGCTGACACATCAACTTGACCGAGCAAGGAAGAAGTGTGAAGTTTATAGGTCCAACTTGCTGTCAATTTTAAAAGCCATTGACGAGCAGAAGCTAGAATTATCAGTTAAAGTTCAAAATATCAAGTTAGAGATGAAAGAGTGA 2373 0.4214 MEFEPLVLSNEVIEFDMIGLGDDAAAIDIEHPVEDDDEFVNGGNNDPVFAITSSAATGGPLIPGGGDSILEPCQGMDFESEEAAKAFYNSYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRVEKERHLEGRVKRPRVETRVGCKAMLVVKIQDSGRWVVSSFVKEHNHELVPPDKVHCLRSHRHVSGPAKSLIDTLQGAGIGPSGIMSALIKEYGGITNIGFTERDCRNYMRSSRQRTLGGDTQILLDYFKSKEAENPSFFYAVQGDEDNCMSNILWVDHKARTNYTYFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCALLINESEASFVWLFETWLEAMSRRPPVSITTDHDRVIRGAINHVFPDTRHRFCKWHIFKECQEKLSHVLSEHHDFEADLHKCVNLTESIEEFESCWSSLIDRYGLREHEWLQEIYGYRRQWVPVYLRDSFFAEMSITQRSDSINSYFDGYINASTTLQLFVKQYEKALESRYEKEVKADYDTINTAPLLKTPSPMEKQAAGVYTRRLFIKFQEELVETLTFLANKVGEEEMITVYRVAKYGESHKAYFVRFNFSEIKATCSCQMFEFSGIVCRHILTVFRVTNILTLPSHYILKRWSRNAKSGVILDDHTTDLLNGGQESLTIRYNNLRREALKYADKGVSSPKVYDVAMSALREAANKVEAASKNGGRLVILDGACKEDLRQGNEAITSCSNAQLSSQISSSTDDHDRTIGKLTHQLDRARKKCEVYRSNLLSILKAIDEQKLELSVKVQNIKLEMKE* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0659 790 Pfam SWIM zinc finger 567 612 IPR007527 GO:0008270
Lja2g0659 790 Pfam FAR1 DNA-binding domain 87 177 IPR004330 -
Lja2g0659 790 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 47 764 IPR031052 GO:0006355
Lja2g0659 790 ProSiteProfiles Zinc finger SWIM-type profile. 578 614 IPR007527 GO:0008270
Lja2g0659 790 Pfam MULE transposase domain 298 390 IPR018289 -
Lja2g0659 790 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 47 764 - -
Lja2g0659 790 SMART 26again6 589 616 IPR006564 GO:0008270
Lja2g0659 790 Coils Coil 742 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0659 Lja-Chr2 5987310 5992035 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja2g0659 MULE 1.4e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0659 - - gmx:100782414 1330.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0659 2 5987310 5992035 Lja2g0659 2 5987310 5992035 ECH