Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0657 ATGAGTGATTCGAAGGAAAACGAGGAAGCTGGCCAGGGTGTGCCGGCAGCTGTGGAAGAAGACCAGCAGTTGGTTGATGTGCATGTTGAAGTTGTCTCTGATCCTGTTACCGTAGAGGAAGCTTCGAATAATGTTGAAAATGGGATGGATCGTCTTGTAAGTGAGTCGAGTCGTGTAGAAAATGAGAAGGAAGATCCTCCTGCTGAGGATACAAATGCGAAACTTGAGGCTGTGAAAGGTTCAGATAATGTTGGAAATGGGACTGATCATCTTGAAAGTGAGTCAAATCAACTTGAACAGGAGAAGACAGATCCTCCTGCTGCTGAGGATACCAATGCGAAACTTGAGGCTGTTACGGTAGAGGAAGATTCAGATAATGTTGGAAATGGGACAAATCATGTTGAACATGAGAAGGAGGACCCTCCTGCTGCTGAGGATACAAATGTGAAACTTGAAGCTGTTACAGTAGAGGAAGATTCAAATAATGTTGAAAATGGGACAGATCATCTTGAAAGTGAGTCAAATCATGTTGAAAATGAGACGGCTGAGCCTCCTGCTGAGGATAGCAATGCAAAACTTGAGGCTGTTACAGTAGAGGAAGATTCAAATAATGTTGAAAATGGGGCAAATCATCTTGAAAGTGAGTCAAATCATGTTGAATGTGGGAAAGCAGAGCCACCTGCTGAGGATACACATGTGAAACTTGAAGCTGTTTCAGAAGATATTCCACAAGAATATGTTCAGGATACCCTTCACAATGTTCCCGTAGAGGCCGATGTTCAGGTTTTCAATACAACTGAGTGTGAAGCTGCTTCTGATGCAAAGGCGGAAGCGGAGGAATTTCCTCAGAGTACTAAGGGTGTTAGTGTTCATCAAAGTGGTGTTAGTGATGCTGACACGACGATGGATGCTGAAACGACGATGGGTGCTGAAACGACAATGGATGCTGAAATGACAGTGGATGCTGAAAGGACGATGGATGCTGAAACGACAGTGGATGCTGAAACGACGATGGATGCTGAAATGACAGTGGATACTGAATTTCCTCAGAGTACTAAGGGTGTTGAAAATGATGATAGTGTTCATCAAAATGGTGTTAGTGATGCTGACACGGCAATGGATGCTGAAACGACAGTGGATGCTGATATTCCTCAGAGTAATAAGGGTGTTGAGAATGATGATAGTATTCATCAAAATGGTGTTAGTGATGCTGACACGATGATGGATGCTGAAACGATGGTGGAGGTGAAGCCGGAAGTTTTTAAAGCGGAAGATAGTAAAACTTGTGATAATGTTGACCCCATGCCCTCAGGTCATAATGATCCTACTATGCTGCACGCCGCGCCAGCGGATACAAAATCTGAGTTCAAGAATGTATTAGAAGTTGAGAAGGCTGATGAAAAGCAAGCTACTGAACCTTCTGATAATGGGAATTCAAACTCAAAGAACATGTTTTTCTTGGATCCTGATCATTTTTATGATGGTAATGAGTCAGGAACAGAAGAGGACCAATCAGCTTTTATGAAAGAGCTCGAGAACTTCTTTAGGGAGCGGAGCATGGAATTCAAACCGCCCAAGTTTTATGGAGAAGGACTTAATTGCCTTAAGTTATGGAGATCTGTAACGAGATTGGGTGGCTATGATAAGGTAACCTCATGTAAGTTATGGAGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACTACAGTTTCATGGACTTTTCGGGGATTTTATGAGAAGGCCCTTCTTGATTATGAAAGGCATAATATAAAAGGTGGTGAGCTGAATGTGCCTATTGCTTCTCAACCAGAGCCTATGAATATTGAAAATCAGTGTATCCAGGCTTCAGTATCAGGGAGAGCCCGGAGAGATGCTGCAGCACGGGCAATGCAGGGTTGGCACTCACAACGTCTCCTCGGCAACGGTGAAGTTAGTGACCCCATTATTAAGGATAGGAATTCTGTGCCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATAAATTTACTTAAACGTAAGAAACCATCATATATGGATAATGCAGTCAAAGCAGCACGAAGTAAACCATCTAAGCCACAATTGGATACAGTTGTCATTGATATTGGACCTCCTGCGGAGTGGGTAAAAGTAAATGTACAGAAAACTAAAGATTGTTTTGAGATATATGCTTTAGTTCCTGGTCTTCTACGGGAAGAGGTCCGAGTTCAATCAGACCCAGCAGGACGCTTGGTCATAAGTGGTGAGCCTGAGCACCCCAATAATCCGTGGGGTGTGACACCTTTCAAAAAGGTTGTGAGCTTGCCCTCAAGAATTGATCCTCATCAGACATCAGCTGTGGTAACCCTGCATGGGCAAGTGTTTATTCGTGTCCCATTTGAACAATCAGAATAG 2397 0.4335 MSDSKENEEAGQGVPAAVEEDQQLVDVHVEVVSDPVTVEEASNNVENGMDRLVSESSRVENEKEDPPAEDTNAKLEAVKGSDNVGNGTDHLESESNQLEQEKTDPPAAEDTNAKLEAVTVEEDSDNVGNGTNHVEHEKEDPPAAEDTNVKLEAVTVEEDSNNVENGTDHLESESNHVENETAEPPAEDSNAKLEAVTVEEDSNNVENGANHLESESNHVECGKAEPPAEDTHVKLEAVSEDIPQEYVQDTLHNVPVEADVQVFNTTECEAASDAKAEAEEFPQSTKGVSVHQSGVSDADTTMDAETTMGAETTMDAEMTVDAERTMDAETTVDAETTMDAEMTVDTEFPQSTKGVENDDSVHQNGVSDADTAMDAETTVDADIPQSNKGVENDDSIHQNGVSDADTMMDAETMVEVKPEVFKAEDSKTCDNVDPMPSGHNDPTMLHAAPADTKSEFKNVLEVEKADEKQATEPSDNGNSNSKNMFFLDPDHFYDGNESGTEEDQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRSVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHNIKGGELNVPIASQPEPMNIENQCIQASVSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSVPVQKREKQLKSINLLKRKKPSYMDNAVKAARSKPSKPQLDTVVIDIGPPAEWVKVNVQKTKDCFEIYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQVFIRVPFEQSE* 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0657 798 MobiDBLite consensus disorder prediction 94 121 - -
Lja2g0657 798 MobiDBLite consensus disorder prediction 196 214 - -
Lja2g0657 798 Gene3D - 501 598 IPR036431 GO:0003677
Lja2g0657 798 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 698 798 IPR002068 -
Lja2g0657 798 SUPERFAMILY HSP20-like chaperones 706 794 IPR008978 -
Lja2g0657 798 CDD ARID 503 588 - -
Lja2g0657 798 MobiDBLite consensus disorder prediction 37 51 - -
Lja2g0657 798 SMART bright_3 502 593 IPR001606 GO:0003677
Lja2g0657 798 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 264 797 IPR045147 GO:0006357
Lja2g0657 798 Gene3D - 699 798 IPR008978 -
Lja2g0657 798 MobiDBLite consensus disorder prediction 162 187 - -
Lja2g0657 798 CDD ACD_sHsps_p23-like 717 793 - -
Lja2g0657 798 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 264 797 - -
Lja2g0657 798 MobiDBLite consensus disorder prediction 1 23 - -
Lja2g0657 798 ProSiteProfiles ARID domain profile. 501 592 IPR001606 GO:0003677
Lja2g0657 798 MobiDBLite consensus disorder prediction 53 76 - -
Lja2g0657 798 MobiDBLite consensus disorder prediction 285 300 - -
Lja2g0657 798 Pfam ARID/BRIGHT DNA binding domain 504 588 IPR001606 GO:0003677
Lja2g0657 798 SMART ARID_2 498 588 - -
Lja2g0657 798 MobiDBLite consensus disorder prediction 278 300 - -
Lja2g0657 798 MobiDBLite consensus disorder prediction 216 232 - -
Lja2g0657 798 MobiDBLite consensus disorder prediction 35 232 - -
Lja2g0657 798 MobiDBLite consensus disorder prediction 128 146 - -
Lja2g0657 798 SUPERFAMILY ARID-like 491 601 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0657 Lja-Chr2 5966738 5974018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0657 496 796 ARID Transcription Factor Family AT1G76510 64.262 4.85e-129 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lja2g0657 ARID 6.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0657 - - lja:Lj2g3v1574130.1 1491.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0657 2 5966738 5974018 Lja2g0657 2 5966738 5974018 ECH