Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0649 ATGACACGTGCGATGAGGATTCTCAATACGGCGGGAAAATCCGCCGCGGTGGCAGCTGCGGTGGCGCCACCGCCGGAGGCGGTGACTCTGGAGTCAGATTTCGTGGTAATCCTAGCTGCCCTTCTCTGCGCTCTGATATGCGTGGTGGGGCTCATAGCGGTGGCGCGGTGCGCGTGGCTCCGGCGAGTCACCGGCGATGGCGGCTACCCCACCCGGCAAGCTCTGGCTAACAAAGGAGTGAAGAAGAAGGTGGTCCAGTCGCTGCCCAAATTCGCCTACGCAGACAGCAGCCCGAGAGAGTGGCTGGCGACGACGGAGTGCGCGATTTGCCTGGCGGAGTTCGACGCCGGCGACGAGATCCGCGTGCTGCCGCAGTGCGGGCACGGGTTCCACGTGGGCTGCATCGACACGTGGCTGGGGTCACACTCCTCTTGCCCTTCCTGTCGGCAGGTTCTGGCGGTGGCGGCGCGGTGTCAGAGGTGTGGGCGTCTCCCGGCCGCTAATAACAGCAGCGGTGGAGGAGCCACCAGTGTGGCGGTGAATGAACCGGAGTTGAAATCCGGAGAAGACGAAAATGCCCCTGCTGTTAATAGTAACAATAATGCTAGTGGTAGCAGTGGAACAGAACATCACAGTCACAACGTTAACAGTGGATTCTTGCCGTGA 666 0.6141 MTRAMRILNTAGKSAAVAAAVAPPPEAVTLESDFVVILAALLCALICVVGLIAVARCAWLRRVTGDGGYPTRQALANKGVKKKVVQSLPKFAYADSSPREWLATTECAICLAEFDAGDEIRVLPQCGHGFHVGCIDTWLGSHSSCPSCRQVLAVAARCQRCGRLPAANNSSGGGATSVAVNEPELKSGEDENAPAVNSNNNASGSSGTEHHSHNVNSGFLP* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0649 221 MobiDBLite consensus disorder prediction 192 221 - -
Lja2g0649 221 Pfam Ring finger domain 106 149 IPR001841 -
Lja2g0649 221 SMART FANCL_C_2 103 161 - -
Lja2g0649 221 CDD RING-H2_PA-TM-RING 106 149 - -
Lja2g0649 221 SUPERFAMILY RING/U-box 84 156 - -
Lja2g0649 221 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Lja2g0649 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 154 IPR013083 -
Lja2g0649 221 SMART ring_2 107 148 IPR001841 -
Lja2g0649 221 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 179 - -
Lja2g0649 221 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 179 - -
Lja2g0649 221 MobiDBLite consensus disorder prediction 185 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0649 Lja-Chr2 5821799 5823065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0649 5 161 C3H Transcription Factor Family AT1G76410 59.877 6.34e-60 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0649 - - gmx:100787383 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0649 2 5821799 5823065 Lja2g0649 2 5821799 5823065 ECH
Lja2g0649 2 5821799 5823065 Lja4g3039 4 57279541 57280418 ECH