Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0644 ATGATTAGAGTTTGGTTGTTGGCTTTACTGATTCTGTACAATGGGTTCTCTTCAACTGGAGCTGGCATGGATAATTCCATAAGACCTGATTTTGTGAATATTGGGGCTCTCTTCTCTTTCAATACTAGTGTTGGTAGGATTGTAAGAATTGCTATAGAAGCTGCTGTTGCAGATGTAAATTCAGATCCAAATATTCTTGGTAAAACCAAGTTGAAGCTCTCACTCCAAGAAGATTCTAAATATAGAGGTTTTCTGAGCATTGCTGAGGTTTTGCAGATCATGGCGAGACACACTGTCGCGATAATTGGTCCCCATAGCTCTGTAACAGCTCATGTCATAACTCATATTGCAAATGAGCTCCAAGTTCCTCTACTATCATTTTCAGCTTTTGACCCTACCCTTTCGTCACTTCAGTTCCCATTTTTCATTAGAACTTGCCACAGTGATCTTTATCAAATGACTGCAATAGCAGACCTTGTTGACCACTATGGGTGGAAAGAAGTTATTGCTGTTTATATTGATGATGATAATGGGAGGAATGGAATTGGCGCGTTAGGTGATAAGCTAGCTGAAAGACGATGCATGATCTCAATGAAAGCACCTTTGAGGCCGGAAGCAACTCGGGAGGACATTACAAATGTGCTTGTTCAGGTGGCTCTTGCAGAATCAAGAGTTATAGTTGTTCATGCCAATACTCTCTGGGGCCCCAAGGTGTTCAGTGTTGCAAAGAACCTTGGGATGATGGGAACTGGTTATGTATGGATAGCCACTGCTTTTCTCTCTGCTGTGCTCGATATAAATAGCCCTCTCCCTTCAAATGCAATGGATGAAATTCAAGGAGTGTTGACACTGCGCGTGCACACGCCCGAGTCTGAGCTCAAAAGAAGGTTTGTTTCTAGGTGGAAAAACTTAACTCGTGGAGAAACTGCTTATGGACCCCTTGGAATGAGTTTTTTATCCCTCTATGCATATGATACTGTGTATGTGCTCGCACATGCACTTGATGCGTTTTTCAAGCAAGGGAACAACATTACTTTCTCAATTGATTCGAAGTTATCTGCAATACGTGGGGACAGCCTGCATCTTGATGCTTTGAACATCTTTGATGAGGGAAAATTGTTGCGTAGAAAGATTTATGAGGTTAACATGACTGGTGTTGCAGGTAGATTCAAGTATACATCTGATGGAAACCTTGTTAATCCTGCATATGAAATTGTCAATGTGGTTGGGACGGGGTCTCGTAGGATCGGTTATTGGTCTAATTACTCTGGATTATCAGTTGTTCCCCCAGAAGCTCTTTATTCCAAACCAGCCAATCATTCCAGGGCAAGTCAGAAGCTATTCCCTGTGATTTGGCCTGGAGAGACAGACCAAAAGCCTCGCGGTTGGGTCTTTCCAAACAGCGGAAGGCTCTTGAAAATTGGAGTGCCAAGAGCTGTTGGTTACAGTGAATTTGTCTCACAAGTACCAGGCACTGACTTGTTTCAGGGATTCTGCATTGATGTATTTCTTTCTGCAGTGGACCTGTTGCCTTATGCTGTTCCCTATAAGTTTATACCATATGGAGATGGTAAGAACAATCCTAGTATCACTGAGCTTGTCCGTCGGATCACAATGGGTGAATTTGATGGTGCAGTAGGTGACATTGCAATTACTACAAGAAGAACAAAGTTGGTGGATTTTACTCAGCCATATGTTGAGTCTGGTCTAGTAGTAGTAGCCCCAGTTAAGGAAGCAGAAACCAGTGCTTTGGCCTTTTTGGCCCCATTTACACCAAAAATGTGGTTTGTCACAGCTAGCTTTTTCATATTAGTGGGAATTGTTGTTTGGATTTTGGAGCATAGGGTGAACGATGAGTTTAGGGGACCACCGAAAAGGCAATTAGTCACTATATTATGGTTTAGTTTTTCAACTATGTTCTATTCCCACAGGGAAAATACAGTGAGCACACTTGGCCGCATTGTGCTGCTTATTTGGTTATTTGTAGTCCTTATAATTAACTCAAGTTATACAGCAAGCTTAACATCAATCCTCACAGTGCAGCAGCTTTATTCGCCGATTAAAGGCATTGAAACTTTAGTAAATAGCAAGGATCCTATTGGTTACAAGCAGGGTTCATTTGCTAAAAATTATTTGATTCATGAGATTGGTATTGATGAATCCAGGCTTGTTCCTTTAAAAACACCAGAAGAATGTGCTAAAGCACTCAAAAAGGGTCCCCAAAATGGTGGTGTTGTTGCTTACGTCGATGAGCGTGCCTACATTGACATCTTCCTTTCAACCCGGTGTGACTTTACTGTTGTAGGTCAAGAATTCACCAGGAACGGTTGGGGATTTGCCTTTCCCCGGGACTCACCACTAGCGATTGACCTGTCAACTGCCATTTTGCAAATGACAGACAATGGAGATCTACAGAGGATCCATGACAAATGGCTTTTGAGCCATGCCTGCATAACACAAGGTGCAAAGCTTGAAGTGGAAAGACTCCAACTTAAAAGCTTTTGGGGCCTCTATGTAATCAGTGGTTGTGCCTGCTTGCTTGCTCTATTCATATATCTTATACAGATAGTGAGGCAGTACAGCAAGCACTGCTCAGATGATCATGAGTTAACTGATCAAAGCTCTGGATCAAGATCTTCACGTCTCAGGACTTTCCTTTCATTTATGGATGAAAAGGAAGAAACTGTGAAGAACAGGTCCAAGAGAAGGAGAATGGAGAGGATCTCAAACAGAAGCAGTGTGGGAGGATCAACATCCATAAACTCCAATAGAGACTATTGTCAAGCATCTCCATATAAAAGTGATTATGGTAATGAAGTCTGA 2823 0.4208 MIRVWLLALLILYNGFSSTGAGMDNSIRPDFVNIGALFSFNTSVGRIVRIAIEAAVADVNSDPNILGKTKLKLSLQEDSKYRGFLSIAEVLQIMARHTVAIIGPHSSVTAHVITHIANELQVPLLSFSAFDPTLSSLQFPFFIRTCHSDLYQMTAIADLVDHYGWKEVIAVYIDDDNGRNGIGALGDKLAERRCMISMKAPLRPEATREDITNVLVQVALAESRVIVVHANTLWGPKVFSVAKNLGMMGTGYVWIATAFLSAVLDINSPLPSNAMDEIQGVLTLRVHTPESELKRRFVSRWKNLTRGETAYGPLGMSFLSLYAYDTVYVLAHALDAFFKQGNNITFSIDSKLSAIRGDSLHLDALNIFDEGKLLRRKIYEVNMTGVAGRFKYTSDGNLVNPAYEIVNVVGTGSRRIGYWSNYSGLSVVPPEALYSKPANHSRASQKLFPVIWPGETDQKPRGWVFPNSGRLLKIGVPRAVGYSEFVSQVPGTDLFQGFCIDVFLSAVDLLPYAVPYKFIPYGDGKNNPSITELVRRITMGEFDGAVGDIAITTRRTKLVDFTQPYVESGLVVVAPVKEAETSALAFLAPFTPKMWFVTASFFILVGIVVWILEHRVNDEFRGPPKRQLVTILWFSFSTMFYSHRENTVSTLGRIVLLIWLFVVLIINSSYTASLTSILTVQQLYSPIKGIETLVNSKDPIGYKQGSFAKNYLIHEIGIDESRLVPLKTPEECAKALKKGPQNGGVVAYVDERAYIDIFLSTRCDFTVVGQEFTRNGWGFAFPRDSPLAIDLSTAILQMTDNGDLQRIHDKWLLSHACITQGAKLEVERLQLKSFWGLYVISGCACLLALFIYLIQIVRQYSKHCSDDHELTDQSSGSRSSRLRTFLSFMDEKEETVKNRSKRRRMERISNRSSVGGSTSINSNRDYCQASPYKSDYGNEV* 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0644 940 Pfam Receptor family ligand binding region 50 410 IPR001828 -
Lja2g0644 940 Gene3D - 148 425 - -
Lja2g0644 940 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 928 - -
Lja2g0644 940 Gene3D - 50 400 - -
Lja2g0644 940 PANTHER GLUTAMATE RECEPTOR 3.6 13 928 - -
Lja2g0644 940 Gene3D - 584 715 - -
Lja2g0644 940 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Lja2g0644 940 CDD GluR_Plant 472 812 - -
Lja2g0644 940 Gene3D - 758 819 - -
Lja2g0644 940 MobiDBLite consensus disorder prediction 893 940 - -
Lja2g0644 940 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
Lja2g0644 940 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Lja2g0644 940 PIRSF IGluLR_plant 1 932 IPR017103 -
Lja2g0644 940 SUPERFAMILY Periplasmic binding protein-like I 28 464 IPR028082 -
Lja2g0644 940 Gene3D - 471 583 - -
Lja2g0644 940 MobiDBLite consensus disorder prediction 910 929 - -
Lja2g0644 940 SUPERFAMILY Periplasmic binding protein-like II 448 814 - -
Lja2g0644 940 Pfam Bacterial extracellular solute-binding proteins, family 3 527 812 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0644 Lja-Chr2 5770387 5774779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0644 5 913 Ion Channels AT3G51480 58.132 0.0 1125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0644 K05387 - gmx:100785258 1489.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0644 2 5770387 5774779 Lja2g0644 2 5770387 5774779 ECH