Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0643 ATGGCACCAGGTACTGGTTGCCCTTCTCAGACAGAAACAGCTATGTTGAGTGGTGGAGCTGGTGGGATCCCCAGGGGCAGTAGTGAGTGTTCCATGGAGGATCAGAATGGTGATACGCTTGGGAATTTGAATCAGAACATTGGGAAGCCTCCAAGGGATCTTTCAGCTATGCGCCATTGTAGCAGTTCTTCATGGTTGGCTGAATCGGAACCAAATATTATTACTGTTGGCTTAAAACCAAGCACAGAGGAAAAATCAGAGTTTTCACTTTCATTGCGATCAGGAAGCTTTTCTGATAAAGGACCAAAGCAATATATGGAGGATGAGTTCATATGTGTTGATGTTCTTCGTGAATGTGTTGGTCCAGGATCAGACCTTCCTTCTCCAGCAGCATTTTATGGGGTATTTGATGGACATGGTGGTGTTGATGCTGCATCATTTACCAGAAAGAACATCCTTAAGTTTATAATTGAAGATCCCCAGTTCCCATCTGGCATTAAGAAAGCAATTAAGAATGCATTTGTGAAGGTTGACAATGCATTTAGAGATGCTAGTGCCCTTGACAGCTCTTCAGGCACCACCGCCCTAGCAGCCCTTGTTCTAGGAAGTGTCATGCTGATTGCCAATGCAGGGGATTCTCGTGCTGTATTGGGCAAAAGGGGCAGAGCCGTTGAACTTTCCAAAGACCACAAACCAAATTGCACATCAGAAAGACTGAGAATTGAGAAACTGGGTGGTGTGATCTATGATGGATACCTCAATGGCCAACTATCAGTGGCTCGCGCTCTCGGAGACTGGCATATCAAAGGCGCTAAAGGCTCGAAAAGCCCCTTGAGCTCCGAGCCTGAGCTCGAGGAGATTATCCTGACAGAAGAAGATGAGTTTTTGATAATGGGGTGTGATGGATTATGGGATGTCATGAGCAGCCAGTGTGCTGTTACAATGGTGAGGAGGGAGCTCATGCAGCACAATGATCCCAACAAGTGTGCAAAAGTGCTCGTTGCTGAGGCCCTCCAACGCAACACGTGCGACAATCTCACAGTTGTGGTGGTTTGTTTCTCTAAAGATCCACCTCCTAAAATTGAGATTCCTAGATCACATAGGAGGAGGAGCATTTCTGCTGAAGGCCTTGATCTTCTCAAGGGTGTCTTGAATGGTAGGTGA 1164 0.4639 MAPGTGCPSQTETAMLSGGAGGIPRGSSECSMEDQNGDTLGNLNQNIGKPPRDLSAMRHCSSSSWLAESEPNIITVGLKPSTEEKSEFSLSLRSGSFSDKGPKQYMEDEFICVDVLRECVGPGSDLPSPAAFYGVFDGHGGVDAASFTRKNILKFIIEDPQFPSGIKKAIKNAFVKVDNAFRDASALDSSSGTTALAALVLGSVMLIANAGDSRAVLGKRGRAVELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHIKGAKGSKSPLSSEPELEEIILTEEDEFLIMGCDGLWDVMSSQCAVTMVRRELMQHNDPNKCAKVLVAEALQRNTCDNLTVVVVCFSKDPPPKIEIPRSHRRRSISAEGLDLLKGVLNGR* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0643 387 Gene3D - 77 357 IPR036457 -
Lja2g0643 387 ProSiteProfiles PPM-type phosphatase domain profile. 93 353 IPR001932 -
Lja2g0643 387 PANTHER PROTEIN PHOSPHATASE 2C 47-RELATED 32 375 - -
Lja2g0643 387 SUPERFAMILY PP2C-like 86 354 IPR036457 -
Lja2g0643 387 MobiDBLite consensus disorder prediction 29 49 - -
Lja2g0643 387 Pfam Protein phosphatase 2C 100 345 IPR001932 -
Lja2g0643 387 ProSitePatterns PPM-type phosphatase domain signature. 132 140 IPR000222 GO:0043169
Lja2g0643 387 PANTHER PROTEIN PHOSPHATASE 2C 32 375 IPR015655 GO:0004722|GO:0006470
Lja2g0643 387 MobiDBLite consensus disorder prediction 1 16 - -
Lja2g0643 387 MobiDBLite consensus disorder prediction 1 54 - -
Lja2g0643 387 SMART PP2C_4 83 351 IPR001932 -
Lja2g0643 387 CDD PP2Cc 93 353 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0643 Lja-Chr2 5764057 5767522 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0643 86 385 PP2C-type Phosphatase Gene Family AT3G51470 79.000 9.47e-177 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0643 K14803 - gmx:100786416 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0643 2 5764057 5767522 Lja2g0643 2 5764057 5767522 ECH