Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0640 ATGTCGTGTTCATCGTCATCAGGTTCTGAAGAAGACGATGAGGGGTTCGATTCCTATCGGAAAGGAGGCTACCACGCCGTCAGGGTCGGCGATCAGTTCGCCGGCGGAAGGTATATAGCTCAGAGGAAGCTTGGTTGGGGTCAATTCTCCACCGTTTGGCTTGCTTATGATACTACCACCTCTTCATATGTTGCTCTCAAGATCCAGAAAAGTGCGGCCCAGTTTAATCAGGCTGCCCTTCATGAGATCAATGTTCTTTCATCCATTACTGATGGTGACCCATTAAATTCGAAGTGTGTTGTCCACTTGATCGACCACTTTAAGCACACAGGTCCAAATGGGCAGCACCTTTGCATGGTCCTTGAGTTCCTTGGTGATAGCTTGCTTCGTTTGACAAAATACAATCATTACAGAGGTCTTCCATTGAATAAAGTTAGAGAGATTTGCAAATACATTTTAATTGGTTTGGATTACTTGCATAGTGAACTTGGTATAATCCACGCTGACCTAAAACCTGAAAACATTCTCCTATTTTCAACCATTGATCTTGCCAAAGACCCTTTTAGATCTGGACTCTCCCCAATTCTAGAGAAGCCTGAGGGAAACGCAAATGGTGGACTTACAAATCTTATTGAGAAAAGGTTGAAAAGAAGAGCAAGGAGGGCAGTAGCTAAAATATCTGGAAGAACAGCTTCAATAGGAAGAACAGAAGAAGCTGCAAGGTCTGGTAGAGATATTGATGGGATTGATGTGCGATGCAAGATAGTCGATTTTGGAAATGCATGCTGGGCTGGTAAGCAGTTTGCAGAAGAAATTCAGACTAGGCAATACAGAGCTCCTGAAGTTGTATTGCAGGCTGGCTATTCTTTCTCAGTCGATATGTGGTCTTTTGCTTGCATTGCTTTTGAGCTTGCCACCGGAGATATGTTATTTACGCCCAAGGAGGGGCCAGGATTCTGTGAGGATGAGGATCACCTTGCCCTAATGATGGAACTCCTTGGCAAGATACCCCGGAAGATTGCAATTTCTGGAGTTCAATCCAAGGATTTCTTTGACAGGCACGGGGATCTCAAAAGGATTCGAAGGCTAAAATTCGTTCCACTTGACAAATTGCTAATTGACAGATACAAATTTTCAGTAAATGATGCTTGTGAGTTTTCAGAATTTCTTTTACCACTTCTTAATTTTGCAACGGAAAAGCGACCAACTGCGCAACAGTGCCTGCAACACCCATGGCTGGATTGCAATGATTCAACTCCAAATGAAAGTACAGTAGAAAAGGTGGGTGTTGGCATGAGCAACCTTAAAATCAAGGTGGGAAACTGA 1326 0.4351 MSCSSSSGSEEDDEGFDSYRKGGYHAVRVGDQFAGGRYIAQRKLGWGQFSTVWLAYDTTTSSYVALKIQKSAAQFNQAALHEINVLSSITDGDPLNSKCVVHLIDHFKHTGPNGQHLCMVLEFLGDSLLRLTKYNHYRGLPLNKVREICKYILIGLDYLHSELGIIHADLKPENILLFSTIDLAKDPFRSGLSPILEKPEGNANGGLTNLIEKRLKRRARRAVAKISGRTASIGRTEEAARSGRDIDGIDVRCKIVDFGNACWAGKQFAEEIQTRQYRAPEVVLQAGYSFSVDMWSFACIAFELATGDMLFTPKEGPGFCEDEDHLALMMELLGKIPRKIAISGVQSKDFFDRHGDLKRIRRLKFVPLDKLLIDRYKFSVNDACEFSEFLLPLLNFATEKRPTAQQCLQHPWLDCNDSTPNESTVEKVGVGMSNLKIKVGN* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0640 441 SUPERFAMILY Protein kinase-like (PK-like) 32 417 IPR011009 -
Lja2g0640 441 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0640 441 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Lja2g0640 441 CDD STKc_SRPK 27 413 - -
Lja2g0640 441 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0640 441 Pfam Protein kinase domain 252 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0640 441 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0640 441 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 440 - -
Lja2g0640 441 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 440 - -
Lja2g0640 441 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Lja2g0640 441 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Lja2g0640 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0640 Lja-Chr2 5741382 5745660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0640 4 414 EF-hand Containing Proteins AT5G22840 51.515 6.99e-166 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lja2g0640 Pkinase 1.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0640 K08832 - gmx:100811724 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0640 2 5741382 5745660 Lja2g0640 2 5741382 5745660 ECH