Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0632 ATGCCGAAGGCCGCTTCCGACTCCAAACCCGCTGACAGCCGGTTGAAGCGCAAGGGCGCTGGAACTGGAAGGAAGCAGACGAAGAAGGCTGCGAAGGATCCTAACAAGCCTAAGAGGCCTTCCAGCGCTTTCTTTGTTTACATGTCTGAGTTCAGAACGCAGTTCAAGAAGGATAATCCTAACAACAAGTCCGTTGCTGCTGTTGGCAAAGCTGCTGGTAGCAAGTGGAAATCCATGACTGATGCTGAGAAGGCTCCCTACGTTGCTAGGGCAGAGAAGGCGAAGGAGGAGTATGAGAAGACTCTCCGTGCCTACAACAATGGATTGGCTGAGAGCAAAGGCTCTGCTGAGGAAGAAGGTTCTGACAAGTCAAAGTCCGAAGTCAATGATGATGATGAGGACGATGATGAAGATGACGAGTGA 423 0.5106 MPKAASDSKPADSRLKRKGAGTGRKQTKKAAKDPNKPKRPSSAFFVYMSEFRTQFKKDNPNNKSVAAVGKAAGSKWKSMTDAEKAPYVARAEKAKEEYEKTLRAYNNGLAESKGSAEEEGSDKSKSEVNDDDEDDDEDDE* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0632 140 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Lja2g0632 140 SUPERFAMILY HMG-box 24 106 IPR036910 -
Lja2g0632 140 MobiDBLite consensus disorder prediction 1 42 - -
Lja2g0632 140 Gene3D High mobility group box domain 21 126 IPR036910 -
Lja2g0632 140 Coils Coil 88 108 - -
Lja2g0632 140 CDD HMGB-UBF_HMG-box 37 103 - -
Lja2g0632 140 SMART hmgende2 36 107 IPR009071 -
Lja2g0632 140 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Lja2g0632 140 MobiDBLite consensus disorder prediction 106 140 - -
Lja2g0632 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 139 IPR031061 -
Lja2g0632 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0632 Lja-Chr2 5684707 5686450 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lja2g0632 HMG_box 4.3e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0632 K25507 - gmx:100499992 185.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0632 2 5684707 5686450 Lja2g0632 2 5684707 5686450 ECH