Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0627 ATGACAGACGACATTGAATCCACACTGTCCACCCTTCATCACTCTCATGCCATTCTCCTCCTTCTCCACCACCCTTTCATGGATTCCTCTTTCCTCACCAACCTTCTCCTCTTCAACAACATCATTCAACCAGAGTTGATGAGAAGCGTGCATGTCTACCGCCAATGCGGTGACGACGGGGAAGAAGAAACCGAAGTTGAAAGGGAGTTTTTGTTTTCAAAGTACAGTTACTATGTGGAAATGCAGGCTTCCCCAATTCTTCAATTGCAGAAATCTTGTGTTTCTGGAATTCGTGAAGGGTATAGGAATGGAGTGTGGGATTGTATTTTTGCGTTTCATGCTGGTCATAGTCCTCAATTTTCCCGCATTCCTCCACTTTTGTTGGTCACCAGAAACCCAAAGCTTCATTGTATTCCAAACTTGCTCAATGATCTCCATATAATATACAAGTTGGACGTGAAGGAGGAAGACATAGATGTAACACAGGAAGAATCATTAGGAAACAACAATGACTGCCTGCCATCAGAAATTGCCTTGCCTAAGCGTGATCTAGATCTCAATTGTCTTCCTTATGAAGAAGACGAGTCCGAGTTACAAGATAATGAGATAGAAGTTGAAAGCTTAACAGGTTTGGTAGGAAAGAAAAAGAGGGCACCCAGTAATCATATCGCAAACATTGCTTATTCAGATTTGGTCAAGTACTTTGATATGCCAATTGTAGAAGCATCAAGAAGACTAAATGTTGGGCTTACTGTTCTCAAGAAAAAGTGCCGAGAGTTCGGCATTCCCCGCTGGCCTCATAGAAAAATCAAATCACTTGACAGTCTCATCCATGATCTTCAGGAAATGGCAAAACACCAAGAGTTGGAGGACAAGGCTGCAGCCATGGCGGTGATGAAGAGACAAAAGATGTTGGAGAGTGAAAAGGAAAACATAGAGAAGCAGCCTTTCATAGAGATACAAAGCGAGACCAAGAAATTCAGGCAGGATATTTTCAAAAGAAGGTACAGAGCTAGAGCTATTGAAAAACAGAATTCTACAGTATCCAGCAGTTAG 1056 0.4214 MTDDIESTLSTLHHSHAILLLLHHPFMDSSFLTNLLLFNNIIQPELMRSVHVYRQCGDDGEEETEVEREFLFSKYSYYVEMQASPILQLQKSCVSGIREGYRNGVWDCIFAFHAGHSPQFSRIPPLLLVTRNPKLHCIPNLLNDLHIIYKLDVKEEDIDVTQEESLGNNNDCLPSEIALPKRDLDLNCLPYEEDESELQDNEIEVESLTGLVGKKKRAPSNHIANIAYSDLVKYFDMPIVEASRRLNVGLTVLKKKCREFGIPRWPHRKIKSLDSLIHDLQEMAKHQELEDKAAAMAVMKRQKMLESEKENIEKQPFIEIQSETKKFRQDIFKRRYRARAIEKQNSTVSSS* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0627 351 Coils Coil 270 290 - -
Lja2g0627 351 PANTHER PROTEIN RKD4 35 344 IPR044607 GO:0003700
Lja2g0627 351 ProSiteProfiles RWP-RK domain profile. 208 293 IPR003035 -
Lja2g0627 351 Pfam RWP-RK domain 225 273 IPR003035 -
Lja2g0627 351 PANTHER PROTEIN RKD5 35 344 - -
Lja2g0627 351 Coils Coil 295 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0627 Lja-Chr2 5654675 5660698 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0627 40 351 AtRKD Transcription Factor Family AT4G35590 48.485 4.70e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lja2g0627 RWP-RK 1.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0627 - - gmx:113001653 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0627 2 5654675 5660698 Lja2g0627 2 5654675 5660698 ECH