Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0626 ATGGGTCTCTGCTTCAGTTCACCCTCCTCCTCCATCCTCAGCATGCCTCCTCAGTATTCAGGTAGAACAAGTAGTGGTAGTGGGAAGAGTAGCATGAGCCAAGTATGGGAGATAAATACTGAAAGTGAAAGTGGTAGTGTTGTTAATAATGTTAAGGGTGGTTCTGGGGAGTTTCTGGAAGTGGCGAAGTTGAAGGTGTTTAGCTTTGGGGATTTGAAATCGGCTACAAAGAGTTTCAAGGCTGATGCATTGATTGGAGAAGGTGGATTTGGTAAAGTTTACAAAGGTTGGTTGGATGAGAAGAAGCTGAGCCCTACAAAACCTGGCTCTGGAATTATGGTTGCTGTAAAGAAATTGAACCCAGAAAGCATGCAGGGCTTTCATGAATGGCAGTCAGAAATCAACTTTTTAGGAAGGATTTCTCATCCCAACCTAGTCAAGCTATTGGGTTACTGTAGGGATGATGAGGAATTTCTACTTGTGTACGAATTCATGCCAAGAGGAAGCTTGGAAAATCATCTCTTCAGAAGAAATACAGAATCACTTTCTTGGAACACCCGACTCAAAATCGCCATTGGTGCGGCTCGGGGCTTGGCATTCTTGCACTCCTTAGAGAAGATAGTCATATACAGAGATTTCAAGGCCTCCAATATACTACTTGATGGGAATTACAATGCAAAAATTTCAGATTTTGGTTTAGCAAAATTTGGACCATCTGGGGAAGAGTCACACGTGACTACCAGGATCATGGGCACATATGGCTATGCTGCTCCAGAATACATGGCAACAGGGCACTTGTATGTAAAGAGTGATGTTTATGGGTTTGGTGTAGTGCTGCTTGAAATGCTGACAGGGTTGCAAGCACTTGATATAAAGCGGCCTGCAAGACAACAAAATCTGGTTGAATGGATGAAGCCTTGTCTTCCTGATAAAAGAAAGTTGAAAACCATCATGGATTTCAGGATTGAAGGTCAATATTCACTCAAGGCAGCATCACAGGCAGCACAACTTGTTCTAAAATGCCTTGAACCTGACCCTAAAAACCGTCCTTCTATGAAGGATGTTGTGGAGACATTGGAAGGCATTAAAGCAGTAAACAATAATTATAACATATCCAATAAACACTCTACTAAGTCTACAGCTATGCACATTCGATAG 1158 0.4223 MGLCFSSPSSSILSMPPQYSGRTSSGSGKSSMSQVWEINTESESGSVVNNVKGGSGEFLEVAKLKVFSFGDLKSATKSFKADALIGEGGFGKVYKGWLDEKKLSPTKPGSGIMVAVKKLNPESMQGFHEWQSEINFLGRISHPNLVKLLGYCRDDEEFLLVYEFMPRGSLENHLFRRNTESLSWNTRLKIAIGAARGLAFLHSLEKIVIYRDFKASNILLDGNYNAKISDFGLAKFGPSGEESHVTTRIMGTYGYAAPEYMATGHLYVKSDVYGFGVVLLEMLTGLQALDIKRPARQQNLVEWMKPCLPDKRKLKTIMDFRIEGQYSLKAASQAAQLVLKCLEPDPKNRPSMKDVVETLEGIKAVNNNYNISNKHSTKSTAMHIR* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0626 385 Gene3D Transferase(Phosphotransferase) domain 1 165 383 - -
Lja2g0626 385 PANTHER OS01G0588500 PROTEIN-RELATED 26 367 - -
Lja2g0626 385 CDD STKc_IRAK 85 362 - -
Lja2g0626 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Lja2g0626 385 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 26 367 - -
Lja2g0626 385 MobiDBLite consensus disorder prediction 1 36 - -
Lja2g0626 385 ProSitePatterns Protein kinases ATP-binding region signature. 85 118 IPR017441 GO:0005524
Lja2g0626 385 SUPERFAMILY Protein kinase-like (PK-like) 56 360 IPR011009 -
Lja2g0626 385 ProSiteProfiles Protein kinase domain profile. 79 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0626 385 Pfam Protein tyrosine and serine/threonine kinase 82 359 IPR001245 GO:0004672|GO:0006468
Lja2g0626 385 Gene3D Phosphorylase Kinase; domain 1 63 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0626 Lja-Chr2 5618101 5622997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0626 40 359 Glycoside Hydrolase AT3G07070 47.239 1.52e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja2g0626 PK_Tyr_Ser-Thr 9.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0626 - - gmx:100794193 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0626 2 5618101 5622997 Lja2g0626 2 5618101 5622997 ECH