Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0620 ATGGGAGGTGGTGAAGCTGCCGCTGAAGGTACCACGGAGACGAACACCACCGACGGTGTCAACGTCAACATCAACATTCGCTGCTCCAATGGTTCCAAGTTTACCGTTCAGATTACCCTCGATTCCACCGTCGGATCCTTCAAGGAGGCGGTTGCCTCCAACTGCGACATCCCTACCGATCAGCAGCGTCTGATTTACAAGGGTCGGATCCTCAAGGATGATCAAACCCTGCAGAGCTATGGTTTGGAGGCAGACCATACTGTTCATTTGGTTCGTGGTTTTGCGGCTTCCAACGCTACTGGCGGGACTAATACTAGTGGGGCTAATACCACAACAACTAATACGAGAGGTGCTGGTGCTAATGAAGGTGGTGGGGGTTTAGGAGGGCCTGGGCTTGGAGCTTCGTTGTTCCCGGGACTAGGTGTCAATGGGATGGCAGGCAGTGGCCTTAGCGGCTTATTTGGAGCGAACCTTCCAGATCTTGAACAAATTCAGCAGCCCTTTTTGAATAATCCCAATATGGTCAGAGAAATAATGAACACCCCGGCTATGCAGAATTTGATAAACAATCCCGAGATAGTGCGCAATCTTATAATGAATAACCCACAGATGCAAGAGCTCATGGATAGAAACCCTGAGCTGGCACACATACTTAATGATCCCAGCACACTTCGCCAGACACTTGAAGCTACAAGGAACCCTGAGATCATGCGCGAAATGATGAGGAATACAGACAGAGCCATGAGCAACATTGAGTCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACTACAATGGCTGGTAATACAGGAAATGATGGTGTCAGGAATCAATCAACTAATCCCTCAACGACTAATTCTGAAGCAACTTCCCCTGTTCCAAATACTAACCCACTTCCTAATCCTTGGTCCTCCACTGGAACTGGAGGTGCACAAGGCAACACCAGAAGGACAACTGCTGGTGGGGATGCTCGGCAGCAGGCACTCACTGGACTAGGAGGACTTGGTGTGCCAGATCTTGAAGGCATGATGGGTGGTATGCCAGATCCTGCTATGTTGACCCAATTAATGCAAAATCCAGCTATTTCACAAATGATGCAGAGTATCCTTTCCAATCCACAGACTATGAATCAGATTCTTGGTCTCAATACTGAGCAGCGTGGCATGCCTGATCTAAACTCACTAAGAGATGTGATGCAAAACCCAGAGTTTCTTCGCTTATTTTCCTCACCTGAGACACTGCAGCAACTCATGTCTTTCCAGCAATCTCTTATGTCTCAAGTTGGCCAGCAGCAACCAACACCGGGGGAACCAGGTCAAACCGGTGGAGGCACTGGATCATTGAACAACATGGGGTTGGAGATGTTATCAAGCATGTTTGGTGGACTTGGAGCTGGTAGCTTAGCTGTTCCGAACAGATCAAATGAGCCACCAGAGCAATTGTATGCCACCCAACTTTCCCAGCTTCAAGAGATGGGGTTCTTTGACACGCAAGAGAACATAAGGGCTCTTATCGCTACGTCAGGGAATGTTCATGCAGCAGTTGAGCGGCTTTTGGGGAACACTGGACAGTAG 1611 0.4848 MGGGEAAAEGTTETNTTDGVNVNINIRCSNGSKFTVQITLDSTVGSFKEAVASNCDIPTDQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAASNATGGTNTSGANTTTTNTRGAGANEGGGGLGGPGLGASLFPGLGVNGMAGSGLSGLFGANLPDLEQIQQPFLNNPNMVREIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNDGVRNQSTNPSTTNSEATSPVPNTNPLPNPWSSTGTGGAQGNTRRTTAGGDARQQALTGLGGLGVPDLEGMMGGMPDPAMLTQLMQNPAISQMMQSILSNPQTMNQILGLNTEQRGMPDLNSLRDVMQNPEFLRLFSSPETLQQLMSFQQSLMSQVGQQQPTPGEPGQTGGGTGSLNNMGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNTGQ* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0620 536 ProSitePatterns Ubiquitin domain signature. 48 73 IPR019954 -
Lja2g0620 536 SMART uba_6 494 532 IPR015940 -
Lja2g0620 536 PANTHER UBIQUILIN 8 536 - -
Lja2g0620 536 CDD UBA_PLICs 494 532 - -
Lja2g0620 536 PRINTS Ubiquitin signature 32 52 IPR019956 -
Lja2g0620 536 PRINTS Ubiquitin signature 74 95 IPR019956 -
Lja2g0620 536 PRINTS Ubiquitin signature 53 73 IPR019956 -
Lja2g0620 536 MobiDBLite consensus disorder prediction 100 126 - -
Lja2g0620 536 CDD Ubl_Dsk2p_like 22 94 - -
Lja2g0620 536 ProSiteProfiles Ubiquitin domain profile. 22 91 IPR000626 GO:0005515
Lja2g0620 536 MobiDBLite consensus disorder prediction 100 119 - -
Lja2g0620 536 Pfam Ubiquitin family 24 91 IPR000626 GO:0005515
Lja2g0620 536 SUPERFAMILY Ubiquitin-like 20 107 IPR029071 -
Lja2g0620 536 SUPERFAMILY UBA-like 490 532 IPR009060 GO:0005515
Lja2g0620 536 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 8 536 - -
Lja2g0620 536 Gene3D - 476 536 - -
Lja2g0620 536 Gene3D - 196 254 - -
Lja2g0620 536 MobiDBLite consensus disorder prediction 276 347 - -
Lja2g0620 536 MobiDBLite consensus disorder prediction 435 460 - -
Lja2g0620 536 MobiDBLite consensus disorder prediction 276 337 - -
Lja2g0620 536 Pfam UBA/TS-N domain 494 530 IPR015940 -
Lja2g0620 536 SMART CBM 394 429 IPR006636 -
Lja2g0620 536 SMART CBM 201 240 IPR006636 -
Lja2g0620 536 SMART CBM 147 188 IPR006636 -
Lja2g0620 536 SMART CBM 352 391 IPR006636 -
Lja2g0620 536 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 488 533 IPR015940 -
Lja2g0620 536 Gene3D - 9 106 - -
Lja2g0620 536 SMART ubq_7 22 93 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0620 Lja-Chr2 5580576 5585854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0620 22 91 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.857 1.58e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0620 K04523 - gmx:100797539 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0620 2 5580576 5585854 Lja2g0620 2 5580576 5585854 ECH