Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0618 ATGGTGATTTCTGATGAAAATGCTTCTTCTAACAACTCACTAAAGCCTGCAAGTTTTCAAGATTGTGTGGGTGGTGCCAGAAAGGTTGGGCAGAACAGAAGAGCGTTGGGGGTGATCAATCAGAGTTTGGTGGAAGGTCGACCTTACCCATGCGTCGTTAACAAGAGGGCATTGTCAGGAAAGATTGATGTTTGTGTGAAGAAGCAGGCAGATCCGGTGCATCGTCCCATCACAAGGAGGTTTGCTGCACAAATTGCTAGCAGCACTCAGCAATCTCAAGCTGAGGAAACCAAGAAGTCAAACTTGACAGTTGGAAATTCGAATGGATTTGGGGAGTGTATATTTGTTGATGATGAACTCAAGCCAGAAGATCAGCCAGTGCCTATGTCTCTGGAGCAAACAGTGCATAGTGAATCTGATCAGATGGAGGAAGTGGAGATGGAGGATATTATTGTAGATGAGCCTATTGTGGACATTGATGCCGGAGATGCGAATAATCCTCTTGCAGTTACTGATTATATTGAAGGTCTTTATTCCTACTACAGAAAAATTGAGAGTACTGGCTGTGTCTCACCTAATTATATGACACAACAATGTGACATTAATGAAAGGATGAGAGCTATACTGATTGACTGGCTTATTGAGGTCCACGACAAATTTGACCTCATGCATGAGACATTGTTTCTCACTGTGAATCTGATAGATAGGTTTTTGGAGAAGCAGACAGTGGTACGGAAAAAGCTCCAATTGGTTGGTCTAGTGGCCATGCTTTTGGCCTGCAAGTATGAGGAAGTTTCGGTGCCCGTGGTGGGAGATCTGATTCTCATATCTGACAAAGCATACTCAAGGAAAGAAGTTCTGGAAATGGAGAAGCTGATGGTGAACACATTGGAGTTCAATATGTCTGTGCCAACAGCATATGTTTTCATGAGAAGGTTCCTAAAGGCAGCTCAAGCAGACAGAAAACTTGAGCTGCTAGCTTTCTTCTTGGTTGAGCTGTCTCTAGTTGAGTATGAGATGCTGAAGTTCCCTCCATCTCATATTGCTGCAGCTGCAGTCTATACAGCTCAATGCGCAATCTATGGCTTCAAACAGTGGTGCAAGACATGTGAATGGCACACCAACTACTCAGAAGACCAGCTATTAGAGTGCTCTAGTTTGATGGTTGGTTTTCACAAAATGGCTGGGACAGGGAAACTTACTGGGGTGCATAGGAAGTATTGCTCATATAAGTTCAACTATACTGCTAAATGTGAACCAGCAAGTTTTCTTCTGGAGAACAACAACCCATTGTTGTAG 1299 0.4342 MVISDENASSNNSLKPASFQDCVGGARKVGQNRRALGVINQSLVEGRPYPCVVNKRALSGKIDVCVKKQADPVHRPITRRFAAQIASSTQQSQAEETKKSNLTVGNSNGFGECIFVDDELKPEDQPVPMSLEQTVHSESDQMEEVEMEDIIVDEPIVDIDAGDANNPLAVTDYIEGLYSYYRKIESTGCVSPNYMTQQCDINERMRAILIDWLIEVHDKFDLMHETLFLTVNLIDRFLEKQTVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYSRKEVLEMEKLMVNTLEFNMSVPTAYVFMRRFLKAAQADRKLELLAFFLVELSLVEYEMLKFPPSHIAAAAVYTAQCAIYGFKQWCKTCEWHTNYSEDQLLECSSLMVGFHKMAGTGKLTGVHRKYCSYKFNYTAKCEPASFLLENNNPLL* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0618 432 SMART Cyclin_C_2 304 421 IPR004367 -
Lja2g0618 432 ProSitePatterns Cyclins signature. 206 237 IPR006671 -
Lja2g0618 432 PANTHER CYCLINS 22 424 IPR039361 -
Lja2g0618 432 Gene3D - 190 302 - -
Lja2g0618 432 Pfam Cyclin, C-terminal domain 304 419 IPR004367 -
Lja2g0618 432 Pfam Cyclin, N-terminal domain 178 302 IPR006671 -
Lja2g0618 432 CDD CYCLIN 205 294 IPR013763 -
Lja2g0618 432 SMART cyclin_7 211 295 IPR013763 -
Lja2g0618 432 SMART cyclin_7 308 390 IPR013763 -
Lja2g0618 432 SUPERFAMILY Cyclin-like 303 421 IPR036915 -
Lja2g0618 432 Gene3D - 178 416 - -
Lja2g0618 432 CDD CYCLIN 302 389 IPR013763 -
Lja2g0618 432 PANTHER CYCLIN-B2-1 22 424 - -
Lja2g0618 432 SUPERFAMILY Cyclin-like 165 301 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0618 Lja-Chr2 5539550 5542962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0618 1 425 Core Cell Cycle Gene Families AT1G20610 56.322 2.35e-167 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0618 K21777 - gmx:100779889 646.351