Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0593 ATGTTGCAGCAGCAAGCAAAACCAATCGAAGGCACCCGTGCGGGCATGACCGGGACAAAACCGAAATCGCAGGTCAATTCTTTCTTTAGGGCACATCGACAAAACCCTAACCCTTCGTGGTCCTCGCATTCTTCATCTCTGTTCCCAGACTCAACATCAATGTCGGATTCTCCAGTAAGAAGGAATTCAAGGTCTCCTTCTCCATGGAGAGCTCAGTCACGATCCAGGTCTAGGTCTCCAAGGCCTAAGTCTAGGTCCCCGAGGCCTAAGTCAAGGTCCCCAAGGGCTAAGTCTAGGTCCCCCCGGCCTAGGTCGAGGTCCCCAAGACCTAGGTCTAGGTCAAGATCGCTTGAGAAGCAAAGGCCCAGGTCCCGCTCCAGAAGCCGTGGCAGGTCAAGATCAAGGAGTCCTGAGGATAGAAATGGTGGGAATACTCTTTATGTGACTGGGCTATCTTCAAGGGTCACTGAGAGAGACCTAGAGGAGCATTTCGCTAAGGAAGGAAAAGTTGCTTCATGTTTTCTCGTGGTGGAGCCTCGAACACGTATTTCTCGTGGATTTGCTTTTATTACGATGGACACTGTTGAGGATGCAAACCGCTGTGTCAAGTATCTCAATCAATCTGTTTTAGAGGGTCGCTATATCACTGTTGAGCGGTCACGAAGAAAGAGGCCGAGGACTCCTACACCTGGACATTATCTTGGGCTGAAAAGTACCAGAGATAGAGACTATGGACATCGTGGTGGTGACCGAGGAAGGTATCGAGGTGGAGGTGGAGGTGGATCTGGCCGTGATGATTACCAACACCGTCGGTCTCCAAGGCGTTCACCATACAGAGGTGGCAGGGATTATTCCCCAAGGCGCTCCTCCCCCTATGCTGGAAGATCTCGAAGGGAAAGGTCTAGGTCTCTTCCTTATTCTCCATATGCTAGCCCAGATAGGAGGTATGCTCGTGGGTCTAGGTGA 966 0.5135 MLQQQAKPIEGTRAGMTGTKPKSQVNSFFRAHRQNPNPSWSSHSSSLFPDSTSMSDSPVRRNSRSPSPWRAQSRSRSRSPRPKSRSPRPKSRSPRAKSRSPRPRSRSPRPRSRSRSLEKQRPRSRSRSRGRSRSRSPEDRNGGNTLYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEDANRCVKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSTRDRDYGHRGGDRGRYRGGGGGGSGRDDYQHRRSPRRSPYRGGRDYSPRRSSPYAGRSRRERSRSLPYSPYASPDRRYARGSR* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0593 321 MobiDBLite consensus disorder prediction 264 282 - -
Lja2g0593 321 Gene3D - 49 229 IPR012677 -
Lja2g0593 321 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 144 222 IPR000504 GO:0003723
Lja2g0593 321 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 55 108 - -
Lja2g0593 321 MobiDBLite consensus disorder prediction 76 110 - -
Lja2g0593 321 CDD RRM_RBMX_like 143 222 - -
Lja2g0593 321 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 146 215 IPR000504 GO:0003723
Lja2g0593 321 MobiDBLite consensus disorder prediction 236 253 - -
Lja2g0593 321 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 91 317 - -
Lja2g0593 321 MobiDBLite consensus disorder prediction 219 321 - -
Lja2g0593 321 PANTHER RNA RECOGNITION MOTIF 55 108 - -
Lja2g0593 321 PANTHER RNA RECOGNITION MOTIF 91 317 - -
Lja2g0593 321 SMART rrm1_1 145 218 IPR000504 GO:0003723
Lja2g0593 321 MobiDBLite consensus disorder prediction 17 75 - -
Lja2g0593 321 MobiDBLite consensus disorder prediction 1 150 - -
Lja2g0593 321 SUPERFAMILY RNA-binding domain, RBD 123 233 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0593 Lja-Chr2 5311256 5314692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0593 140 229 Eukaryotic Initiation Factors Gene Family AT1G49760 26.667 7.91e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0593 K12897 - gmx:100527350 296.204