Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0584 ATGGATTTTCTCCCAAATCCAAGCCCTTCTCGTCCATCGTTGTTCGGTTCCTTCGGAAATCTCGTTGACAAGGTTAAACAGATTTGTAATCTCGCAATCTCTGCCATTATTGGTAACATCTTGTCCGCAATCTTGACCTTCTGCTTCGCATTAGTTGGCACTTTGTTGGGGGCTATGACAGGGGCTTTGATAGGTCAAGAGACTGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGTGCTATATCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCCTCTCTTGTTCTTTGGCATTCTGATGAATCTGGGATTGGGTGTCTCTTATACTTGATTGATGTTATTGGTAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATAGGTCCAGCCATGTTGAGTGCAGTTCAAAGTCAGATGGGTGCTGTTGAAACTGGCTTTGATGAGGTTCAGAACATCTTTGACACCGGCTGCGGCGGTGCAAAAGGTTTATCAGGAGATTCAGTAGAAAAAATCCCAAAAATCAAAATTACTACTGACAACAATGCTGATGCATCTGGTGAAAGAGTTTCCTGTTCAGTTTGCCTCCAGGACTTTCAGCTGGGAGAGACTGTTAGAAGCTTACCTCATTGTCATCACATGTTTCACCTACCCTGCATAGACAAGTGGCTCTTCAGGCATGGCTCTTGCCCATTATGTAGAAGGGATCTCTAA 714 0.4482 MDFLPNPSPSRPSLFGSFGNLVDKVKQICNLAISAIIGNILSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWHSDESGIGCLLYLIDVIGSLLSGRLVRERIGPAMLSAVQSQMGAVETGFDEVQNIFDTGCGGAKGLSGDSVEKIPKIKITTDNNADASGERVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0584 237 CDD RING-H2_PA-TM-RING 192 234 - -
Lja2g0584 237 ProSiteProfiles Zinc finger RING-type profile. 192 234 IPR001841 -
Lja2g0584 237 Pfam Ring finger domain 191 234 IPR001841 -
Lja2g0584 237 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 14 237 IPR044523 -
Lja2g0584 237 SUPERFAMILY RING/U-box 191 237 - -
Lja2g0584 237 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE, YMGG-LIKE GLY-ZIPPER-RELATED 14 237 - -
Lja2g0584 237 SMART ring_2 192 233 IPR001841 -
Lja2g0584 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 237 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0584 Lja-Chr2 5242462 5244558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0584 20 237 C3H Transcription Factor Family AT5G66070 75.229 1.91e-116 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0584 - - lja:Lj2g3v1670720.1 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0584 2 5242462 5244558 Lja4g3091 4 58528241 58530070 PCT