Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0579 ATGTCTCTCAAAGGCTTGGTATCACTTGTCTTCGACTTAGTGGGTCTAGCAGAAGTACCAAGGAACAATAATGATGCATCCAATTTCATGGAGAAGAGTGGGGGACATGGTTGGTGTTGCGTGTGCTTGTCGAGGCTAAAAGACAGAGATGAAATCCGAGTCCTTCCTTGCTTGCACGAGTTCCATAAGATTTGTGTGAACAGATGGCTTAAGGGTCATCACAAAACATGTCCATTGTGTCGTTTCTCAATGGGCGCTGCTGAGGAGAAGTCTCATCGTGCTGAAATGTTCACTGATGAGATGGTAATTTGGTTTTCTTCTTTCCATATAGCTGGTATGTAA 342 0.4386 MSLKGLVSLVFDLVGLAEVPRNNNDASNFMEKSGGHGWCCVCLSRLKDRDEIRVLPCLHEFHKICVNRWLKGHHKTCPLCRFSMGAAEEKSHRAEMFTDEMVIWFSSFHIAGM* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0579 113 PANTHER TARGET OF ERK KINASE MPK-1 32 98 - -
Lja2g0579 113 PANTHER GB|AAF27103.1 32 98 - -
Lja2g0579 113 ProSiteProfiles Zinc finger RING-type profile. 39 81 IPR001841 -
Lja2g0579 113 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 91 IPR013083 -
Lja2g0579 113 SMART ring_2 39 80 IPR001841 -
Lja2g0579 113 Pfam Ring finger domain 39 81 IPR001841 -
Lja2g0579 113 SUPERFAMILY RING/U-box 38 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0579 Lja-Chr2 5193838 5194179 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0579 33 91 C3H Transcription Factor Family AT1G80400 45.763 8.78e-14 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0579 - - vra:106777444 176.022