Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0565 ATGGGTAACATGTGCAGAGACTTGTTTGGTAGATTATGTGGTTATGCCACTTTATTGCAGAAAAACAGCACCCCAAAAGGTAGAAGAATTTTCCACAGAGATGTGGAGAAAGAAGAATTCCAGTATGCCAGTAGCCATTGTCTCTCATCCTACTACAGTGTGTTTGTGGTTCGACTAGCTATCATGATCATGCTAGCCATCTTGATAGGGCTTCTCACCATTTTGACATGGCACTTCACAAAGATTTATACAGCAAAATCACTAAGTAGTTTGGCATATGGTCTGCGTTATGAACTTCTGCAACGCCCCATCTTGCGGATGTGGAACATTTTGAACTCTACTGCTGAAATTACAACAGCACAGGTCAAGCTTTCTCAGTATGTGATCAGGCGTCACAGCAACCCATCAACTCAAGCAGAGCAAGTTGAGTTGTATGAAGCGATGAGGGCTGTAACATGGGCGCTTTTTTCTAGCCGGAAAGCTCTCAACTCAATAACTATCAATTACAAGAATGGATTTGTCCAGGCATTCCATAGAGATCTGAAGGATAACAACACATTTTACATATACTCTGATCTTGCAAACTACTCCATGGCTGCCAGCGATACTAACGTGATGGGTTCCCTTTCAACACGTCAGGCATGGGACGATAAGGCCATTCATGGTAACTTTTCTGCAAAATGGTACCGCGAACCCCTTGACCCTGTCAGCGGCGAGAAGATTGGAAAAGCGATGCAAATTGCACCTGAAGACTTGATCAACATAGCTGGCCTTTCCCAAGTGCCTGATGGTGTAGCTTCATGGCATGTTGCAGTGAGCAAGTTTACTGATTCACCATTGCTTTCAGCAGCATTGCCAGTTTGGGACTCTTCTAATAAAAGTATTATGGCAGTTGTGGGTGTCACAACTGCACTTTATAGTGTAGGACACCTAATGAAAGAACTAGTTGAGTTACACAGTGGCCACATGTATTTGACTTCCCAAGAGGGTTACTTGCTTTCAACTTCCACAAGTGCACCTCTACTGACAAATTCAACAAAGCCTCCAAAGCTTAAGATGGCTGTTGACTGTGAAGATGATGTGATAAGAATGGGAGCTGAGTGGTTACACAGAACTTATGGGAAAAAATTTCCTTCAGCTCATGAGGTTCATGTAGAAAACGCCATGCTCGGCCACCAGAAATATTACATTGACTCATTCTTCCTGAACTTGAAGAGACTTCCTTTGGTAGGTGTAATCATATTACCAAGAAAGTATATCATGGGGCAGGTAGACGAAAGAGCCTTCAAAACGTTGGTTATTTTGATATCTGCGGCTTTATGTATTTTAGTCATCGGATGTGTTTGCATTTTGATATTGACAAACGGAGTGTCAAAGGAAATGAATCTAAGAGCAGAATTGATAAGTCAACTGGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAACTACAAAAGTCAATTCCTTGCCAACATGAGTCATGAACTGAGGACACCTATGGCAGCAGTAATTGGGTTGCTTGACATCCTTATATCTGATGACTGTCTCACAAATGAACAATATTCAACAGTTACCCAAATAAGAAAATGCTCAACCGCCCTGCTCCGTCTTCTTAACAATATTTTGGATCTGAGCAAGGTGGAATCCGGAAAACTGGTCCTAGAAGTTGCAGAATTTGATTTGGGGCGGGAACTTGAAGGGCTGGTAGATATGTTCTCTGTGCAATGCATTAACCACAATATAGAGACTGTTTTAGACCTTTCTGATGATATGCCAAAGGTAGTTCGGGGTGATTCTGCTAGAGTAGTTCAAATATTTGCGAATTTGATCAACAATTCAATTAAATTTACTCCATCGGGACATATTATTCTGCGAGGATGGTCTGAAACCCCAAGTTTTTGTGGTGAGAGCCTGAATTTTCCTCTTGACCAGAAGAAATCGCGGAGTTTACAGAAGAGCAGAGAAAGGATAAATCCAAATCATGCAAAGAGAGCATCTATGAGAGATAACAAAGTGATACTTTGGTTTGAAGTTGATGACACAGGCTGTGGTATTGACCCAAGCAAATGGGATGCTGTGTTTGAAAGTTTTGAGCAAGCTGATCCATCAACTACTCGACTGCATGGTGGCACTGGGCTTGGTCTTTGCATTGTCAGAAACTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTGTCAAAAAGGAGGGCCAAGGAACATTAATACAATTGTGCTTGCATCTCAGTGTACCCGTGGAACACACAGATCAACACTGTGCAGTAGATTTGACAAAGAATAGCTTAGTGGTTCTGCTTGCACTACATGGTAACATGGGTCGATTAATCACATCCAAGTGGTTACAGAAAAACGGGGTGTGCACAATGGAAGCTTCTGAATGGAATGGACTAACTCAAGTTTTGAGGGAACTATTTCATGCAAGAAGTTCAGTCCATAATAATGACTTCGATGCTCACTATGAGGGATTGAAGTCTAAACTACTCACCATACAAGATATGCGGAACCCGACTTTTGTCATTGTTGTTGACATTGGCCTACTTGACTTGAGCACAGATATATGGAAGCAACAGCTTAACTTCCTTCACAGGTACTTCGGGAGAGCAAAGTTTGTATGGATGCTAAACCATGACACGTCGAACACCATTAAGATGGAGCTTCGTAGGAAAGGGCATGTACTAATGGTGAACAAACCTCTTTACAAAGCAAAAATGATTCATATTTTGGAAGCTGTCATAAAGGAGAGAAATCTTGAACTGCAAAAGAAAAATATGACTTCTTCAAGGACCACAATGAAAGAGGGTGATTCGCACGAGTTTGTTGAGATTGATTCTACTCAGTTTGATGCTACTAGCTCTGATGATTCGGACATATCTGAAATGGCCGGTTCTAATCCTGTTAGTGCCAGTGGAGATAAGCCAACTGAAAATGGATATTTGGAAGAAACTAATTTGAGTAAAGAAGAATCTTGCCAGAGTAGCCTCAGTTCCAATTATGCCACTGAAGACACCCAACCTATATCACTGTCTAGTAAAGCACCATCCTCTCCAACAGCAGCACAAGATGGAGATTCTGAATGTGGGGAAACAAATAGAGTCACCGGCTCAAGTAAAGCAATAAATGGAAAGAAATCTCTGGAGGGCCTTAGGATTTTGCTTGCAGAAGATACACCAGTACTCCAAAGAGTTGCAACCATAATGCTTGAAAAAATGGGAGCTGTTGTTGTTGCTGTTGGTGATGGACAACAGGCAGTAGATGCTCTCAATATCATGGTCAGTGCCGAAGATTTTAGAAGAGAGTCTCTCCAGAAGGAAAGAAACACAAGATCTCAAACAGAGATTTTCAGTTGCCATCCATATGACTTGATCCTAATGGATTGTCAGATGCCGAAGATGGATGGATACGAGGCGACAAAAGCAATAAGGAAATCAGAAGAGGGAACAGCCCTGCACATTCCCATAGTTGCTCTTACAGCTCATGCAATGTCATGTGATGAAGCCAAGTGCCTGCAGGTGGGCATGGATGCTTACTTAACAAAGCCAATTGACTTCAAGAAGATGGTGTCCACCATCATTTCACTCACTAAAAGAACATCTTGA 3609 0.4195 MGNMCRDLFGRLCGYATLLQKNSTPKGRRIFHRDVEKEEFQYASSHCLSSYYSVFVVRLAIMIMLAILIGLLTILTWHFTKIYTAKSLSSLAYGLRYELLQRPILRMWNILNSTAEITTAQVKLSQYVIRRHSNPSTQAEQVELYEAMRAVTWALFSSRKALNSITINYKNGFVQAFHRDLKDNNTFYIYSDLANYSMAASDTNVMGSLSTRQAWDDKAIHGNFSAKWYREPLDPVSGEKIGKAMQIAPEDLINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKSIMAVVGVTTALYSVGHLMKELVELHSGHMYLTSQEGYLLSTSTSAPLLTNSTKPPKLKMAVDCEDDVIRMGAEWLHRTYGKKFPSAHEVHVENAMLGHQKYYIDSFFLNLKRLPLVGVIILPRKYIMGQVDERAFKTLVILISAALCILVIGCVCILILTNGVSKEMNLRAELISQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEVAEFDLGRELEGLVDMFSVQCINHNIETVLDLSDDMPKVVRGDSARVVQIFANLINNSIKFTPSGHIILRGWSETPSFCGESLNFPLDQKKSRSLQKSRERINPNHAKRASMRDNKVILWFEVDDTGCGIDPSKWDAVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGEIKVVKKEGQGTLIQLCLHLSVPVEHTDQHCAVDLTKNSLVVLLALHGNMGRLITSKWLQKNGVCTMEASEWNGLTQVLRELFHARSSVHNNDFDAHYEGLKSKLLTIQDMRNPTFVIVVDIGLLDLSTDIWKQQLNFLHRYFGRAKFVWMLNHDTSNTIKMELRRKGHVLMVNKPLYKAKMIHILEAVIKERNLELQKKNMTSSRTTMKEGDSHEFVEIDSTQFDATSSDDSDISEMAGSNPVSASGDKPTENGYLEETNLSKEESCQSSLSSNYATEDTQPISLSSKAPSSPTAAQDGDSECGETNRVTGSSKAINGKKSLEGLRILLAEDTPVLQRVATIMLEKMGAVVVAVGDGQQAVDALNIMVSAEDFRRESLQKERNTRSQTEIFSCHPYDLILMDCQMPKMDGYEATKAIRKSEEGTALHIPIVALTAHAMSCDEAKCLQVGMDAYLTKPIDFKKMVSTIISLTKRTS* 1203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0565 1202 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 538 744 IPR036890 -
Lja2g0565 1202 CDD HisKA 484 545 IPR003661 GO:0000155|GO:0007165
Lja2g0565 1202 PRINTS Bacterial sensor protein C-terminal signature 691 701 IPR004358 GO:0016310|GO:0016772
Lja2g0565 1202 PRINTS Bacterial sensor protein C-terminal signature 732 745 IPR004358 GO:0016310|GO:0016772
Lja2g0565 1202 PRINTS Bacterial sensor protein C-terminal signature 673 687 IPR004358 GO:0016310|GO:0016772
Lja2g0565 1202 PRINTS Bacterial sensor protein C-terminal signature 708 726 IPR004358 GO:0016310|GO:0016772
Lja2g0565 1202 SUPERFAMILY CheY-like 1050 1199 IPR011006 -
Lja2g0565 1202 Gene3D - 1033 1200 - -
Lja2g0565 1202 Gene3D - 471 550 - -
Lja2g0565 1202 SMART HisKA_10 483 549 IPR003661 GO:0000155|GO:0007165
Lja2g0565 1202 MobiDBLite consensus disorder prediction 927 1042 - -
Lja2g0565 1202 Pfam Response regulator receiver domain 1054 1194 IPR001789 GO:0000160
Lja2g0565 1202 SMART REC_2 1052 1194 IPR001789 GO:0000160
Lja2g0565 1202 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 596 746 IPR003594 -
Lja2g0565 1202 MobiDBLite consensus disorder prediction 947 1042 - -
Lja2g0565 1202 ProSiteProfiles Response regulatory domain profile. 1053 1198 IPR001789 GO:0000160
Lja2g0565 1202 Pfam His Kinase A (phospho-acceptor) domain 484 549 IPR003661 GO:0000155|GO:0007165
Lja2g0565 1202 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1199 - -
Lja2g0565 1202 CDD REC_hyHK_CKI1_RcsC-like 1054 1194 - -
Lja2g0565 1202 ProSiteProfiles Histidine kinase domain profile. 490 748 IPR005467 -
Lja2g0565 1202 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 471 550 IPR036097 GO:0000155|GO:0007165
Lja2g0565 1202 SMART HKATPase_4 596 748 IPR003594 -
Lja2g0565 1202 PANTHER OSMOSENSOR HISTIDINE KINASE 1 1199 - -
Lja2g0565 1202 Gene3D - 551 751 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0565 Lja-Chr2 5109100 5115776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0565 6 1199 Histidine Kinase Gene Family AT2G17820 64.847 0.0 1566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja2g0565 HATPase_c 2.3e-23 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0565 - - gmx:100814068 2000.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0565 2 5109100 5115776 Lja2g0565 2 5109100 5115776 ECH
Lja2g0565 2 5109100 5115776 Lja4g3116 4 58919416 58926214 PCT