Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0556 ATGATTTCTGCAATCTCTTTTCCTTCATCTCTCTCCGCCGCGAATCTCACCGGCAACACCGTCGCCACACCGCCTCGCCGCGTCAGATCCCGACCTGTAGTCTCCTTCGCCACAGCTACAGCCACCGCCACCTCCACCGCCGATGCTAGATCCACCTGGACGGAGCAACCGAGACCTTCTTCTACATATCTGATCTCCCCATGCTCCTCTCTCTACGAGATCCTCGGAATCCCCGCCGGCGCATCCAGTCAGGAAATCAAAGCTGCATACCGGCGGCTAGCTAGAGTTTGCCACCCCGATGTGGCGGCAATCGACCGGAAAAACTCATCTGCCGACGATTTCATGAAGATTCACGCTGCGTACTCCACGCTATCAGATCCTGAGAAACGCGCTACTTACGACCGGAGCCTATTCCGGCGACAGCGGCCGATGTCGACGGCTGTGGTGTTCTCCGGCTACTCGAGCCGGAACTGGGAAACGGATCAGTGCTGGTAG 495 0.5798 MISAISFPSSLSAANLTGNTVATPPRRVRSRPVVSFATATATATSTADARSTWTEQPRPSSTYLISPCSSLYEILGIPAGASSQEIKAAYRRLARVCHPDVAAIDRKNSSADDFMKIHAAYSTLSDPEKRATYDRSLFRRQRPMSTAVVFSGYSSRNWETDQCW* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0556 164 CDD DnaJ 72 126 IPR001623 -
Lja2g0556 164 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 1 164 - -
Lja2g0556 164 SUPERFAMILY Chaperone J-domain 65 140 IPR036869 -
Lja2g0556 164 ProSitePatterns Nt-dnaJ domain signature. 114 133 IPR018253 -
Lja2g0556 164 PRINTS DnaJ domain signature 90 105 IPR001623 -
Lja2g0556 164 PRINTS DnaJ domain signature 109 129 IPR001623 -
Lja2g0556 164 PRINTS DnaJ domain signature 72 90 IPR001623 -
Lja2g0556 164 PANTHER - 1 164 - -
Lja2g0556 164 Pfam DnaJ domain 71 134 IPR001623 -
Lja2g0556 164 SMART dnaj_3 69 129 IPR001623 -
Lja2g0556 164 ProSiteProfiles dnaJ domain profile. 70 137 IPR001623 -
Lja2g0556 164 Gene3D DnaJ domain 60 154 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0556 Lja-Chr2 5021903 5023063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0556 72 134 C2H2 Transcription Factor Family AT1G74250 43.284 8.55e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0556 - - gmx:100800959 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0556 2 5021903 5023063 Lja2g0556 2 5021903 5023063 ECH
Lja2g0556 2 5021903 5023063 Lja4g3132 4 59331963 59332695 ECH