Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0555 ATGGGCATATGTTTTTCCTCCACCAAGGTCAGCGGCTCTAACAGCACCAACAACAACACCACCACCACCACCGATGCCGCCGCCAACCGCAAACAACGGAGTTCGGAGACGACAACCACGGTGGTGCAGAAGCAGCAAGCGACGACCGGTCAACGCCGGAGGTCGACGGAAGACGCACAGAAGAAGCAGAAACCCAAAGAGAAAACCGGTTCGAGGAGGCAAGGGGGGCATGTCCCGTGCGGGAAGCGCACAGATTTCGGTTACGATAAAGACTTCGATAAGAAATTCTCGCTCGGGAAATTGTTGGGACATGGCCAATTCGGTTACACCTATGTTGGAATCGATAAATTCAATGGGGATCGTGTCGCTGTTAAGAGACTCGAGAAGAACAAGATGGTTCTCCCCATAGCGGTTGAGGATGTTAAGAGAGAGGTCAAGATATTGAAAGCACTTACTGGCCATGAAAATGTGGTTCAGTTCCATAATGCTTTTGAGGATGATTCATATGTATATATAGTTATGGAGTTATGCGAGGGTGGAGAATTGCTAGATCGGATATTGGCCAAGAAGGACAGCCGGTATACTGAAAAAGATGCAGCAGTAGTTGTAAGGCAGATGCTTAAGGTTGCAGCAGAGTGTCATTTACACGGTTTGGTACATCGCGATATGAAACCAGAGAATTTCCTTTTCAAATCAAACCGAGAAGATTCAGCTTTAAAGGCTACCGATTTTGGTTTGTCTGATTTCATAAAACCTGGAAAGAAGTTTCAAGATATTGTTGGAAGTGCTTATTATGTTGCACCTGAAGTGTTAAAAAGGAAGTCAGGCCCTGAATCAGATGTATGGAGTATTGGTGTGATTACGTACATATTGCTTTGTGGGAGACGGCCGTTTTGGGACAAGACTGAGGATGGAATCTTCAAGGAGGTCTTAAGGAACAAGCCTGATTTCCGGCGAAAACCATGGCCAACCATAAGTAATGCTGCAAAAGATTTTGTGAAGAAATTGTTGGTGAAAGATCCCCGGGCAAGATTAACTGCTGCTCAGGCTCTGTCACATTCATGGGTTAGAGAAGGAGGAGATGCTTTGGAGATTCCTATTGATATATCTGTCCTGGGCAACATGCGACAGTTTGTAAAGTATAGTCGTTTGAAACAATTTGCACTAAGGGCATTGGCTAGCACTCTTAATGAAGATGAGTTGTCTGATCTAAAGGATCAGTTTGATGCGATAGATGTGGACAAAAATGGTGCTATTAGTCTTGAAGAGATGAGACAGGCTCTTGCTAAAGATCTCCCTTGGAAGTTGAAAGAATCACGTGTGCTAGAGATATTGCAAGCGATAGACAGCAACACAGATGGGTTAGTGGATTTCGCCGAGTTTGTGGCAGCTACATTACATGTGCATCAATTGGAGGAACATGACTCTGATAAGTGGCAGCAACGGTCTCAGGCAGCTTTTCTGAAATTTGACTTGGATAAGGATGGCTTTATTACTAAGGATGAACTCAGAATGCATACTGGTCTGAGAGGCTCCATTGATCCATTGCTTGAGGAAGCCGATATTGACAAAGATGGAAAAATCAGCTTACAAGAATTCCGTAGACTTCTAAGAACTGCAAGCATTGGTTCTCGAAATGTTTCAAGCCCAAGTCACCGTCAGCGGAAGATCTAA 1674 0.4462 MGICFSSTKVSGSNSTNNNTTTTTDAAANRKQRSSETTTTVVQKQQATTGQRRRSTEDAQKKQKPKEKTGSRRQGGHVPCGKRTDFGYDKDFDKKFSLGKLLGHGQFGYTYVGIDKFNGDRVAVKRLEKNKMVLPIAVEDVKREVKILKALTGHENVVQFHNAFEDDSYVYIVMELCEGGELLDRILAKKDSRYTEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSNREDSALKATDFGLSDFIKPGKKFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNAAKDFVKKLLVKDPRARLTAAQALSHSWVREGGDALEIPIDISVLGNMRQFVKYSRLKQFALRALASTLNEDELSDLKDQFDAIDVDKNGAISLEEMRQALAKDLPWKLKESRVLEILQAIDSNTDGLVDFAEFVAATLHVHQLEEHDSDKWQQRSQAAFLKFDLDKDGFITKDELRMHTGLRGSIDPLLEEADIDKDGKISLQEFRRLLRTASIGSRNVSSPSHRQRKI* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0555 557 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Lja2g0555 557 SMART serkin_6 96 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0555 557 MobiDBLite consensus disorder prediction 1 82 - -
Lja2g0555 557 ProSitePatterns Protein kinases ATP-binding region signature. 102 125 IPR017441 GO:0005524
Lja2g0555 557 Gene3D Phosphorylase Kinase; domain 1 89 181 - -
Lja2g0555 557 Gene3D Transferase(Phosphotransferase) domain 1 182 369 - -
Lja2g0555 557 ProSiteProfiles EF-hand calcium-binding domain profile. 399 434 IPR002048 GO:0005509
Lja2g0555 557 SMART efh_1 440 468 IPR002048 GO:0005509
Lja2g0555 557 SMART efh_1 512 540 IPR002048 GO:0005509
Lja2g0555 557 SMART efh_1 482 510 IPR002048 GO:0005509
Lja2g0555 557 SMART efh_1 403 431 IPR002048 GO:0005509
Lja2g0555 557 MobiDBLite consensus disorder prediction 1 53 - -
Lja2g0555 557 ProSitePatterns EF-hand calcium-binding domain. 412 424 IPR018247 -
Lja2g0555 557 ProSiteProfiles EF-hand calcium-binding domain profile. 478 513 IPR002048 GO:0005509
Lja2g0555 557 Pfam Protein kinase domain 98 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0555 557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Lja2g0555 557 ProSitePatterns EF-hand calcium-binding domain. 521 533 IPR018247 -
Lja2g0555 557 ProSiteProfiles EF-hand calcium-binding domain profile. 516 543 IPR002048 GO:0005509
Lja2g0555 557 ProSiteProfiles Protein kinase domain profile. 96 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0555 557 CDD STKc_CAMK 95 355 - -
Lja2g0555 557 ProSiteProfiles EF-hand calcium-binding domain profile. 436 471 IPR002048 GO:0005509
Lja2g0555 557 PANTHER SERINE/THREONINE-PROTEIN KINASE 32 547 - -
Lja2g0555 557 SUPERFAMILY EF-hand 388 539 IPR011992 -
Lja2g0555 557 Gene3D - 397 466 - -
Lja2g0555 557 ProSitePatterns EF-hand calcium-binding domain. 491 503 IPR018247 -
Lja2g0555 557 Gene3D - 374 536 - -
Lja2g0555 557 SUPERFAMILY Protein kinase-like (PK-like) 94 367 IPR011009 -
Lja2g0555 557 MobiDBLite consensus disorder prediction 54 73 - -
Lja2g0555 557 Pfam EF-hand domain pair 484 537 IPR002048 GO:0005509
Lja2g0555 557 Pfam EF-hand domain pair 402 465 IPR002048 GO:0005509
Lja2g0555 557 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 28-LIKE 32 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0555 Lja-Chr2 5012019 5016713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0555 1 550 EF-hand Containing Proteins AT2G17890 77.046 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lja2g0555 Pkinase 2.6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0555 K13412 - gmx:100805954 933.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0555 2 5012019 5016713 Lja2g0555 2 5012019 5016713 ECH
Lja2g0555 2 5012019 5016713 Lja4g3137 4 59404625 59413579 PCT