Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0553 ATGTTGCACCAATGCCTTAAAATGTATGTCATGTATTATCTAAAACTTTTTGTTGATGCAGTGGAGTTTGCGGTTGATGGCTCTATCAATGGCGAGACATCCGGAAATGCTGCTATTGGTGAGGTCAGCAGAATAGCTGTTGAAAACAGAGCTGGAGGAAGTTCTGCTGAACCTTACAAACAAGATCAAGATGATAATGTGACTCGAGATTCTTCTGGAGGAGAAACTATACCATCAGCAGTTCCTGCCGTATCACTTGCATCTGTTGATGAGCCCTATGTGGGTCTGGAGTTTGATTCGGAAGCAGCAGCACATGCATTTTATAATGCATATGCCACTCAAGTTGGATTCATCATACGCGTAAGTAAACTCTCACGATCAAGGCGTGATGGAACTGTTATTGGACGGGCTCTAGTTTGCAACAAAGAGGGTTACAGAATGCCTGACAAGCGTGAAAAGATTGTAAGGCAAAGGGCAGAGACAAGGGTTGGTTGCCGGGCAATGATCTTGGTGAGGAAAGTTAGTTCTGGTAAATGGGTTGTTACAAAGTTTGTAAAGGAGCACACACATCCTCTGAGTCCTGGAAAAGGTAGAAGGGATTGCGTATATGAACAATATCCGAATGAGCACGATAAAATTCGGGAACTTTCTCAGCAGTTGGCAATAGAGAAGAAGCGTTCTGCAACTTATAAAAGACATCTTGAATTGATATTTGATTACATTGATGAGCACAATGAGAGCCTTTCAAAGAAAATACAGCACATTGTAGACTGTGTGAAGGACATGGAAACCAAAGAAGAGCAAAGTCACTGA 813 0.4219 MLHQCLKMYVMYYLKLFVDAVEFAVDGSINGETSGNAAIGEVSRIAVENRAGGSSAEPYKQDQDDNVTRDSSGGETIPSAVPAVSLASVDEPYVGLEFDSEAAAHAFYNAYATQVGFIIRVSKLSRSRRDGTVIGRALVCNKEGYRMPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSPGKGRRDCVYEQYPNEHDKIRELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKDMETKEEQSH* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0553 270 Pfam FAR1 DNA-binding domain 107 193 IPR004330 -
Lja2g0553 270 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 19 268 - -
Lja2g0553 270 MobiDBLite consensus disorder prediction 52 77 - -
Lja2g0553 270 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 19 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0553 Lja-Chr2 5002853 5005757 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja2g0553 FAR1 1.7e-30 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0553 - - gmx:100806900 405.601