Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0547 ATGGAACAACCACCTCAACAACAACAACAGAATGAGGATGGTGGTGGGAGTAGTGGTGGAAAAGGGGGGTTTCTGAGCAGGCAAAGCAGTACACGGTGGACTCCCACCACAGACCAGATAAGAATATTGAAGGAGCTTTACTACAACAATGGAATAAGATCCCCGAGTGCAGAGCAGATTCAGAGGATCTCTGCTCGGCTGAGACAGTACGGCAAGATTGAAGGCAAGAATGTCTTTTACTGGTTCCAGAACCACAAAGCTAGAGAGAGGCAGAAGAAAAGGTTCACTTCTGAAACTCATCTTCTTCCCAATCCCATACAACAACAACAAAGAAATGGAACTAATGCTGCTTGGAAGCAACCTGAAGAACAACCCATTATTAACCACACCAAGTATTCTAGTAACAACATTTCAGCTCCTGCAGGGATCATCACTTCTGCTCCATCTTCTTCTGCAGAGATTGTTTCTGTTGGCCAGATAGGAAACTTTGGTTATGGATCTTTGCCTATGGAAAAGAGTTTTAGGGACTGCTCAATATCTGCTGGAGGCAACACAGGCTATGCTGGAAGTGCTATAAACCACAACCTGGGATGGATGGGTGTGGATCCATATTCCTCAGCCTACACCAATTTCTTTGACAAAATAAGGCCAACTGAAGAAGAAACCATGGAAGAAGAAGGACAAGAGAATGGTTCACCAGAGATTGAAACCCTTCCTTTATTCCCGATGCATGGTGAGGACATTCATAGTGGCTATTTCAACCTCAAGTCTAATTCTTCTCACTATGCTGGTGGCTGGTACCAGACTGAAGAAGGGTACTTCAACAATGGTTCTCGTGCTTCCTTGGAGCTCAGCCTCAAATATCCTGATTTTGCTTAA 879 0.4448 MEQPPQQQQQNEDGGGSSGGKGGFLSRQSSTRWTPTTDQIRILKELYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSETHLLPNPIQQQQRNGTNAAWKQPEEQPIINHTKYSSNNISAPAGIITSAPSSSAEIVSVGQIGNFGYGSLPMEKSFRDCSISAGGNTGYAGSAINHNLGWMGVDPYSSAYTNFFDKIRPTEEETMEEEGQENGSPEIETLPLFPMHGEDIHSGYFNLKSNSSHYAGGWYQTEEGYFNNGSRASLELSLKYPDFA* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0547 292 SUPERFAMILY Homeodomain-like 24 99 IPR009057 -
Lja2g0547 292 Gene3D - 25 91 - -
Lja2g0547 292 CDD homeodomain 31 93 IPR001356 GO:0003677
Lja2g0547 292 Pfam Homeodomain 30 91 IPR001356 GO:0003677
Lja2g0547 292 ProSiteProfiles 'Homeobox' domain profile. 26 92 IPR001356 GO:0003677
Lja2g0547 292 MobiDBLite consensus disorder prediction 1 36 - -
Lja2g0547 292 SMART HOX_1 28 96 IPR001356 GO:0003677
Lja2g0547 292 PANTHER PROTEIN WUSCHEL 6 287 - -
Lja2g0547 292 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 6 287 IPR044555 GO:0003700|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0547 Lja-Chr2 4920782 4922259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0547 24 247 Wox Gene Family AT2G17950 43.028 1.21e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lja2g0547 Homeodomain 1.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0547 - - gmx:100775555 370.548