Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0545 ATGGCCATCAGAAAGTCCAATAAACTATCACAAGCTGTTGTGATCAAGCAAATTCTCAAAAGATGCTCAAGTTTTGGGAAGAAGCAGAGCAACAATGAAGAAAATCTTCCTGAAGATGTACCAAAAGGACACTTTGCAGTGTATATTGGTGAGAACAGGACAAGACACATTGTCCCAATTTCATGGCTGGATCATCCAGAGTTTCAAGGTCTGCTCCAAAGGGCTGAGGAAGAGTTTGGTTTCTGTCATGACATGGGACTCACAATTCCCTGTGATGAAGTGGTTTTTGAGTCCCTAATCTCATTGATGAGATAG 315 0.4159 MAIRKSNKLSQAVVIKQILKRCSSFGKKQSNNEENLPEDVPKGHFAVYIGENRTRHIVPISWLDHPEFQGLLQRAEEEFGFCHDMGLTIPCDEVVFESLISLMR* 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0545 104 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 7 104 IPR003676 GO:0009733
Lja2g0545 104 PANTHER AUXIN-INDUCED PROTEIN 15A-LIKE 7 104 - -
Lja2g0545 104 Pfam Auxin responsive protein 20 102 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0545 Lja-Chr2 4903693 4904007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0545 5 103 Calmodulin-binding Proteins AT4G34750 44.444 1.55e-23 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0545 K14488 - gmx:100798840 182.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0545 2 4903693 4904007 Lja4g3144 4 59485648 59485968 ECH
Lja1g3513 1 43828413 43829062 Lja2g0545 2 4903693 4904007 ECH
Lja2g0545 2 4903693 4904007 Lja2g0545 2 4903693 4904007 ECH
Lja1g2356 1 27265807 27266480 Lja2g0545 2 4903693 4904007 ECH