Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0541 ATGGGAAGGGTTATCCGGGCGCAGCGTAAGGGAGCGGGGTCCGTCTTCAAATCCCACACCCACCACCGCAAGGGTCCGGCGAGGTTCCGGAGTCTCGATTTCGGTGAGAGAAATGGTTACCTGAAAGGAGTGGTCACCGACGTCATCCACGACCCTGGTCGCGGTGCTCCTCTTGCCAAGGTCACTTTCCGCCACCCTTTCAGGTACAAGAAGCAAACCGAGCTTTTCGTTGCTGCTGAAGGTATGTACACTGGTCAATTCATCTTCTGTGGGAAGAAGGCTACTCTTGTTGTTGGCAATGTCTTGCCCATCAGATCCATCCCTGAAGGAGCTGTTATCTGTAACGTTGAGCACCATGTTGGTGACCGTGGCGCTTTTGCTAGGTGCTCCGGTGACTATGCTATTGTTATCAGCCACAACCCTGATAACGACACCTCTAGGATTAAGCTTCCATCTGGGGCAAAGAAGATTGTTCCAAGTGGGTGCAGGGCCATGATTGGGCAAGTAGCAGGTGGAGGAAGAACTGAGAAGCCCCTTCTTAAGGCTGGTAATGCTTACCATAAGTTTAGGGTGAAGAGGAACTGCTGGCCCAAGGTTCGCGGTGTGGCTATGAATCCAGTTGAGCATCCTCATGGTGGTGGTAACCACCAGCATATTGGTCATGCTAGCACCGTCAGGCGTGATGCGCCTCCTGGACAGAAGGTTGGTCTCATTGCTGCCAAGAGGACTGGTCGTCTCAGAGGACAAGCTGCTGCAACTGCTGCTAAGGCTGATAAGACCACTTAA 786 0.5293 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYKKQTELFVAAEGMYTGQFIFCGKKATLVVGNVLPIRSIPEGAVICNVEHHVGDRGAFARCSGDYAIVISHNPDNDTSRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAATAAKADKTT* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0541 261 Gene3D Ribosomal protein L2, domain 3 170 247 IPR014726 -
Lja2g0541 261 PANTHER 60S RIBOSOMAL PROTEIN L8 1 259 - -
Lja2g0541 261 PANTHER RIBOSOMAL PROTEIN L2 1 259 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lja2g0541 261 Pfam Ribosomal Proteins L2, C-terminal domain 98 225 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lja2g0541 261 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 1 255 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lja2g0541 261 Gene3D - 90 169 IPR014722 -
Lja2g0541 261 SUPERFAMILY Translation proteins SH3-like domain 99 246 IPR008991 -
Lja2g0541 261 ProSitePatterns Ribosomal protein L2 signature. 197 208 IPR022671 GO:0003735|GO:0005840|GO:0006412
Lja2g0541 261 Gene3D - 1 86 IPR012340 -
Lja2g0541 261 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Lja2g0541 261 SMART Ribosomal_L2_C_2 96 231 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lja2g0541 261 MobiDBLite consensus disorder prediction 210 230 - -
Lja2g0541 261 Pfam Ribosomal Proteins L2, RNA binding domain 13 89 IPR022666 GO:0003735|GO:0005840|GO:0006412
Lja2g0541 261 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0541 Lja-Chr2 4881531 4883096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0541 1 258 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 92.248 0.0 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0541 K02938 - mnt:21409345 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0541 2 4881531 4883096 Lja2g0541 2 4881531 4883096 ECH
Lja2g0541 2 4881531 4883096 Lja4g3145 4 59493422 59495235 PCT